XLOC_033523 (mespba)


Basic Information

Item Value
gene id XLOC_033523
gene name mespba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 15308219 ~ 15316731 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065601
GATATGTTACGGAGTTTATGTGAAGAAGCACCTAACGTTAGCATCTTTCCACAACAAAACATATGCTATAGGCTAATGATAGCTGCTAAAGTGAGCACAGACACGACATGCAAACCTCAAGCAAGAACCAATGGAGCAGTTCCAGCTCCGAGTCCGAGTTTTCCAGCATTTCCTCTCCAGAGACAACTTCACCGGATCAGAGCTTCTCGCCGCCCCATCAAACCAAACCTCCGTGCTCCAAATTAGTCAAATCTTCTAATATCATGAAGAAAAAGCGGAGATTGAGGCTGAAGAACCCGAGCGAGCAGCGGCAGAACGCTAGTGAGAAGGAAAAGCTGAGGATGAGGGATCTGACCAAAGCTCTTCATCATCTCAGGAGCTTCTTACCTGCTTCAGTAGCTCCGGTAGGACAAACCCTGACCAAAATCGAGACTCTGAGGCTGACCATACAATATATCTCCTTCTTGTCTTCTCAGCTTGGGCTCAGTGAAGAAGAGCTGAGCTACAGGAGACAAGAAAACTCCAGCGGATGCTCTTTGTCGAGTTTTGAGTGTTCGTCTGTGAGTGGAGGTTTTGTTGGGACGGAGCAGGGTTATGCTCTCTGTGATGGACAGTATGAGGACTGCTCTGGTTATGGAGGACAATACAGGGAGCGGTATGGAGGTTTGACACAGCAGCATTCAACGGAGCAAAACGGCTTGGTCAGTATTGACGGCTTCATCCAGAGTCAACAGTGTGGGCAGATGACACAGACACCGTACCAGGTTTACGGAAAAAACTTTGGCTATCATCTCGTTCCTCAGACTTACTGGAGATGACGGAAAGATCTCCATCACACCAAAAACTGAGGGCGGATACTGTATTGTGTACAGTGAACTGATTTATGGCTTCCTGTGTTATGtgaaagcaataaaacaaaagttattcTTGATATTCTTAAAATTTAAGTGATATGTTTTATCCATGTATATCCTTTGTAAATACAAAACTATATTTGATATGTATCTGTAATAAAACAcatctttaaatgtt
>TCONS_00065602
GAGACAGCAATGGCTACCGTGAGCCTGCAGAGGTGTCACCTCGCACCTCCGAAATCCAACATATAAACCTCCATCCTCCTTTCACCAGCACAGACACGACATGCAAACCTCAAGCAAGAACCAATGGAGCAGTTCCAGCTCCGAGTCCGAGTTTTCCAGCATTTCCTCTCCAGAGACAACTTCACCGGATCAGAGCTTCTCGCCGCCCCATCAAACCAAACCTCCGTGCTCCAAATTAGTCAAATCTTCTAATATCATGAAGAAAAAGCGGAGATTGAGGCTGAAGAACCCGAGCGAGCAGCGGCAGAACGCTAGTGAGAAGGAAAAGCTGAGGATGAGGGATCTGACCAAAGCTCTTCATCATCTCAGGAGCTTCTTACCTGCTTCAGTAGCTCCGGTAGGACAAACCCTGACCAAAATCGAGACTCTGAGGCTGACCATACAATATATCTCCTTCTTGTCTTCTCAGCTTGGGCTCAGTGAAGAAGAGCTGAGCTACAGGAGACAAGAAAACTCCAGCGGATGCTCTTTGTCGAGTTTTGAGTGTTCGTCTGTGAGTGGAGGTTTTGTTGGGACGGAGCAGGGTTATGCTCTCTGTGATGGACAGTATGAGGACTGCTCTGGTTATGGAGGACAATACAGGGAGCGGTATGGAGGTTTGACACAGCAGCATTCAACGGAGCAAAACGGCTTGGTCAGTATTGACGGCTTCATCCAGAGTCAACAGTGTGGGCAGATGACACAGACACCGTACCAGGTTTACGGAAAAAACTTTGGCTATCATCTCGTTCCTCAGACTTACTGGAGATGACGGAAAGATCTCCATCACACCAAAAACTGAGGGCGGATAC

Function

symbol description
mespba Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including circulatory system development; response to retinoic acid; and somitogenesis. Predicted to be active in nucleus. Is expressed in paraxial mesoderm; presumptive paraxial mesoderm; segmental plate; somite; and somite 11. Orthologous to human MESP1 (mesoderm posterior bHLH transcription factor 1).

GO:

id name namespace
GO:0001707 mesoderm formation biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0097101 blood vessel endothelial cell fate specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0032526 response to retinoic acid biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000406-9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including circulatory system development; response to retinoic acid; and somitogenesis. Predicted to be active in nucleus. Is expressed in paraxial mesoderm; presumptive paraxial mesoderm; segmental plate; somite; and somite 11. Orthologous to human MESP1 (mesoderm posterior bHLH transcription factor 1).

Ensembl:

ensembl_id ENSDARG00000030347

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065601 False 1032 mRNA 0.44 3 15308219 15316731
TCONS_00065602 True 851 mRNA 0.50 2 15313443 15316557

Neighbor

gene id symbol gene type direction distance location
XLOC_033521 sv2ba coding upstream 2204 15266093 ~ 15306015 (+)
XLOC_033520 FP101884.1 coding upstream 175128 15132977 ~ 15133091 (+)
XLOC_033519 ntrk3b coding upstream 369639 14632157 ~ 14938580 (+)
XLOC_033518 mrpl46 coding upstream 764255 14536083 ~ 14543964 (+)
XLOC_033517 NA coding upstream 938006 14314351 ~ 14370213 (+)
XLOC_033524 NA coding downstream 50411 15367142 ~ 15393853 (+)
XLOC_033525 NA coding downstream 95479 15412210 ~ 15416286 (+)
XLOC_033526 igf1rb coding downstream 129498 15446229 ~ 15610129 (+)
XLOC_033527 lrrc28 coding downstream 301396 15618127 ~ 15653635 (+)
XLOC_033528 mef2ab coding downstream 342549 15659280 ~ 15712421 (+)
XLOC_033515 CU467822.1 non-coding upstream 1026994 14281093 ~ 14281225 (+)
XLOC_033511 NA non-coding upstream 1443135 13862309 ~ 13865084 (+)
XLOC_033509 NA non-coding upstream 1508080 13797644 ~ 13800139 (+)
XLOC_033533 NA non-coding downstream 864427 16181158 ~ 16183641 (+)
XLOC_033534 CT030144.1 non-coding downstream 887264 16203995 ~ 16204113 (+)
XLOC_033535 NA non-coding downstream 907581 16224312 ~ 16225084 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01159542_00001795_00003109 NA coding CI01159542 null 1700 ~ 3120 (-)