Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00065601 |
| length | 1032 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_033523 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 15308219 ~ 15316731 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001707 | mesoderm formation | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0001757 | somite specification | biological_process |
| GO:0097101 | blood vessel endothelial cell fate specification | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0048641 | regulation of skeletal muscle tissue development | biological_process |
| GO:0003007 | heart morphogenesis | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0032525 | somite rostral/caudal axis specification | biological_process |
| GO:0032526 | response to retinoic acid | biological_process |
| GO:0061371 | determination of heart left/right asymmetry | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-000406-9 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including circulatory system development; response to retinoic acid; and somitogenesis. Predicted to be active in nucleus. Is expressed in paraxial mesoderm; presumptive paraxial mesoderm; segmental plate; somite; and somite 11. Orthologous to human MESP1 (mesoderm posterior bHLH transcription factor 1). |
| ensembl_id | ENSDART00000165683 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00068558 | lncRNA | upstream | 618096 | 14632607 ~ 14690123 (+) | True | XLOC_033519 |
| TCONS_00068557 | lncRNA | upstream | 938006 | 14348128 ~ 14370213 (+) | False | XLOC_033517 |
| TCONS_00068794 | lncRNA | upstream | 938006 | 14364178 ~ 14370213 (+) | True | XLOC_033517 |
| TCONS_00068793 | lncRNA | upstream | 951383 | 14353770 ~ 14356836 (+) | False | XLOC_033517 |
| TCONS_00065594 | lncRNA | upstream | 956547 | 14348066 ~ 14351672 (+) | False | XLOC_033517 |
| TCONS_00068795 | lncRNA | downstream | 50411 | 15367142 ~ 15393853 (+) | False | XLOC_033524 |
| TCONS_00068796 | lncRNA | downstream | 61783 | 15378514 ~ 15379359 (+) | True | XLOC_033524 |
| TCONS_00068797 | lncRNA | downstream | 95479 | 15412210 ~ 15416286 (+) | True | XLOC_033525 |
| TCONS_00068559 | lncRNA | downstream | 559180 | 15875911 ~ 15879796 (+) | False | XLOC_033530 |
| TCONS_00068560 | lncRNA | downstream | 564345 | 15881076 ~ 15883077 (+) | False | XLOC_033530 |
| TCONS_00065598 | mRNA | upstream | 2204 | 15266093 ~ 15306015 (+) | False | XLOC_033521 |
| TCONS_00065596 | mRNA | upstream | 369639 | 14632157 ~ 14938580 (+) | False | XLOC_033519 |
| TCONS_00065595 | mRNA | upstream | 764255 | 14536083 ~ 14543964 (+) | True | XLOC_033518 |
| TCONS_00065591 | mRNA | upstream | 1005503 | 14291323 ~ 14302716 (+) | False | XLOC_033516 |
| TCONS_00065587 | mRNA | upstream | 1041753 | 14211322 ~ 14266466 (+) | False | XLOC_033514 |
| TCONS_00065603 | mRNA | downstream | 8099 | 15324830 ~ 15333427 (+) | False | XLOC_033522 |
| TCONS_00065604 | mRNA | downstream | 13088 | 15329819 ~ 15332329 (+) | True | XLOC_033522 |
| TCONS_00065605 | mRNA | downstream | 129498 | 15446229 ~ 15610129 (+) | True | XLOC_033526 |
| TCONS_00065606 | mRNA | downstream | 301396 | 15618127 ~ 15653635 (+) | True | XLOC_033527 |
| TCONS_00065607 | mRNA | downstream | 342549 | 15659280 ~ 15712421 (+) | False | XLOC_033528 |
| TCONS_00065599 | other | upstream | 14977 | 15280549 ~ 15293242 (+) | True | XLOC_033521 |
| TCONS_00065597 | other | upstream | 175128 | 15132977 ~ 15133091 (+) | True | XLOC_033520 |
| TCONS_00065590 | other | upstream | 1026994 | 14281093 ~ 14281225 (+) | True | XLOC_033515 |
| TCONS_00065588 | other | upstream | 1041961 | 14216970 ~ 14266258 (+) | False | XLOC_033514 |
| TCONS_00065558 | other | upstream | 1967951 | 13340143 ~ 13340268 (+) | True | XLOC_033501 |
| TCONS_00065621 | other | downstream | 887264 | 16203995 ~ 16204113 (+) | True | XLOC_033534 |
| TCONS_00065625 | other | downstream | 1223204 | 16539935 ~ 16549089 (+) | True | XLOC_033538 |
| TCONS_00065626 | other | downstream | 1415943 | 16732674 ~ 16732790 (+) | True | XLOC_033539 |
| TCONS_00065650 | other | downstream | 1938997 | 17255728 ~ 17271007 (+) | False | XLOC_033545 |
| TCONS_00065651 | other | downstream | 1939064 | 17255795 ~ 17260768 (+) | False | XLOC_033545 |
