Fish Transcriptome and Expression Database

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model fish

XLOC_033501 (CU571326.1)

Basic Information

Item	Value
gene id	XLOC_033501
gene name	CU571326.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007118.7
NCBI id	CM002891.2
chromosome length	74282399
location	13340143 ~ 13340268 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065558
tacaacagaatttcgcacacacaaactctagtgtgaccgcagctttactcactgaagctatgcAAGGCTGAGTTTGTTCAGTACCTGAATGGAAGACCGCATGGGAAAACTAGGCTGCTGTTGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000084136

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00065558	True	126	rRNA	0.46	1	13340143	13340268

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_033500	syt7b	coding	upstream	1860	13039426 ~ 13338283 (+)
XLOC_033499	slc25a22b	coding	upstream	340230	12976173 ~ 12999913 (+)
XLOC_033498	saa	coding	upstream	383709	12950507 ~ 12956434 (+)
XLOC_033497	fth1a	coding	upstream	403435	12927944 ~ 12936708 (+)
XLOC_033496	CABZ01068862.1	coding	upstream	486926	12853103 ~ 12853217 (+)
XLOC_033502	dagla	coding	downstream	42584	13382852 ~ 13487378 (+)
XLOC_033503	arih1l	coding	downstream	151184	13491452 ~ 13514737 (+)
XLOC_033504	plekho2	coding	downstream	187128	13527396 ~ 13572981 (+)
XLOC_033505	ankdd1a	coding	downstream	241988	13582256 ~ 13618498 (+)
XLOC_033506	clpxa	coding	downstream	299205	13639473 ~ 13679937 (+)
XLOC_033493	CU914775.1	non-coding	upstream	1167897	12172129 ~ 12172246 (+)
XLOC_033492	NA	non-coding	upstream	1470559	11868634 ~ 11869584 (+)
XLOC_033491	NA	non-coding	upstream	1520565	11689658 ~ 11819578 (+)
XLOC_033490	NA	non-coding	upstream	1744627	11593801 ~ 11595516 (+)
XLOC_033509	NA	non-coding	downstream	457376	13797644 ~ 13800139 (+)
XLOC_033511	NA	non-coding	downstream	522041	13862309 ~ 13865084 (+)
XLOC_033515	CU467822.1	non-coding	downstream	940825	14281093 ~ 14281225 (+)
XLOC_033517	NA	non-coding	downstream	974083	14314351 ~ 14370213 (+)
XLOC_033520	FP101884.1	non-coding	downstream	1792709	15132977 ~ 15133091 (+)

Expression

Co-expression Network