Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_033498 |
| gene name | saa |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 12950507 ~ 12956434 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| saa | Acts upstream of with a positive effect on neutrophil chemotaxis. Acts upstream of with a negative effect on neutrophil-mediated killing of bacterium. Acts upstream of or within with a positive effect on cell maturation. Acts upstream of or within neutrophil migration and response to bacterium. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle. Is expressed in liver. Orthologous to several human genes including SAA2 (serum amyloid A2). |
| id | name | namespace |
|---|---|---|
| GO:0006953 | acute-phase response | biological_process |
| GO:0009617 | response to bacterium | biological_process |
| GO:1990266 | neutrophil migration | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0034364 | high-density lipoprotein particle | cellular_component |
| id | description |
|---|---|
| ko04147 | Exosome |
| id | description |
|---|---|
| ZDB-GENE-040927-15 | Acts upstream of with a positive effect on neutrophil chemotaxis. Acts upstream of with a negative effect on neutrophil-mediated killing of bacterium. Acts upstream of or within with a positive effect on cell maturation. Acts upstream of or within neutrophil migration and response to bacterium. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle. Is expressed in liver. Orthologous to several human genes including SAA2 (serum amyloid A2). |
| ensembl_id | ENSDARG00000045999 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00065550 | False | 638 | mRNA | 0.44 | 4 | 12950507 | 12956434 |
| TCONS_00065551 | True | 378 | mRNA | 0.54 | 3 | 12950649 | 12956193 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_033497 | fth1a | coding | upstream | 13799 | 12927944 ~ 12936708 (+) |
| XLOC_033496 | CABZ01068862.1 | coding | upstream | 97290 | 12853103 ~ 12853217 (+) |
| XLOC_033495 | cx36.7 | coding | upstream | 114282 | 12835048 ~ 12836225 (+) |
| XLOC_033494 | saxo2 | coding | upstream | 570307 | 12371061 ~ 12380200 (+) |
| XLOC_033493 | CU914775.1 | coding | upstream | 778261 | 12172129 ~ 12172246 (+) |
| XLOC_033499 | slc25a22b | coding | downstream | 19739 | 12976173 ~ 12999913 (+) |
| XLOC_033500 | syt7b | coding | downstream | 82992 | 13039426 ~ 13338283 (+) |
| XLOC_033501 | CU571326.1 | coding | downstream | 383709 | 13340143 ~ 13340268 (+) |
| XLOC_033502 | dagla | coding | downstream | 426418 | 13382852 ~ 13487378 (+) |
| XLOC_033503 | arih1l | coding | downstream | 535018 | 13491452 ~ 13514737 (+) |
| XLOC_033492 | NA | non-coding | upstream | 1080923 | 11868634 ~ 11869584 (+) |
| XLOC_033491 | NA | non-coding | upstream | 1130929 | 11689658 ~ 11819578 (+) |
| XLOC_033490 | NA | non-coding | upstream | 1354991 | 11593801 ~ 11595516 (+) |
| XLOC_033509 | NA | non-coding | downstream | 841210 | 13797644 ~ 13800139 (+) |
| XLOC_033511 | NA | non-coding | downstream | 905875 | 13862309 ~ 13865084 (+) |
| XLOC_033515 | CU467822.1 | non-coding | downstream | 1324659 | 14281093 ~ 14281225 (+) |
| XLOC_033517 | NA | non-coding | downstream | 1357917 | 14314351 ~ 14370213 (+) |
