XLOC_033499 (slc25a22b)


Basic Information

Item Value
gene id XLOC_033499
gene name slc25a22b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 12976173 ~ 12999913 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065552
CAGAGTTTTATGTGTCACATCATTCAGCGGGCTTGTTTTAGCTGTAGTGCACAGAATAAAAACCTCAAAGCCTTTACCGTTGAAACATCCTTCGCTCAGAGTTTTTCGTTCACAGCTCAGGAGACTGTAAGTTCTCAGCTGGGTTTCATGCATTATAAGAAAGATTTCAGCCTGAAGTCCTGCTCATCTCCATCTTTTCAGTGACCATGTTAAACATCCCCTCTGACTACAAATCGCTCAAACAGGAACAGCTATAGAAATGCGCTGGACATCAATATCAGCCACAGCGAAGGCAGTTCTGACTCTCTGAAAATGCAAATGTGATGCCATAACATCTGCTCTGATACATTGATTGCtttgttttcatttgaaatgGCTGACAATCAGATCAGTCTGCCAGCTAAACTCATCAATGGAGGCATTGCTGGACTGATTGGCGTCACTTGTGTTTTTCCAATTGATCTGGCAAAAACACGCCTTCAAAACCAGCAAAATGGATCACGTGTATACACTAACATGTCTGACTGTCTGATGAAAACCGTGCGGTCTGAAGGATTCACTGGGATGTACAGAGGtgattgtgtatttgtgtttagCTCATCCAGAAGTGTTGATGCTCGGAGAAACTCCATTATTTCTGCTTTTTTCCTCCTGATATCCCTCCTTTCATGTGTAGGGGCTGCTGTTAATCTGGCTCTTGTGACTCCAGAAAAGGCCATCAAACTGGTCGCCAATGATTTCTTCAGACAGCAGCTCTCCAAAGACGGGGAGAAGTTGACGCTGGTTAGAGAAATGTTAGCAGGTTGTGGTGCTGGGACCTGTCAGGTGATTATAACCACTCCGATGGAGATGCTGAAGATCCAGTTGCAGGATGCCGGCAGATTAGAGGCCCAGAGGAAGATGATTGGTCCGGATGCTGTAAGGGGCCGGGCCAAAGACCGCACTGTTCATTTGAAGTCTCCCTCAGCTCTCCAGCTCTCCAGAAATCTGCTGAAGCACAAAGGCATCGCTGGTCTCTATACGGGACTGGGGGCCACTCTATTACGGGATGTGCCCTTTTCTATCATCTACTTCCCACTGTTTGCTAACCTGAATAGTCTGGGCAGAAGAAACGCTGATGGTTCGGCTCCGTTTTACATCTCTTTCCTGTCCGGCTGTTTTGCAGGCTGCGCCGCAGCGGTTGCGGTCAATCCTGTGGATGtgaTAAAGACCAGGCTTCAGTCTTTGTCCCGAGGACATCATGAGGACACTTACAGTGGAGTCAGAGACTGTATCAGTAAGATTCTCCGTCACGAGGGTCCGTCTGCTTTCTTAAAGGGGTCTTACTGTCGTGCACTGGTCATCGCGCCGCTGTTTGGCATCGTACAGGTGGTTTATTTCCTCGGAGTTGGTGAATTTGTTCTCAGCCTCCTGCACGGACAAATACACTGA
>TCONS_00065553
GAATAAAAACCTCAAAGCCTTTACCGTTGAAACATCCTTCGCTCAGAGTTTTTCGTTCACAGCTCAGGAGACTGTAAGTTCTCAGCTGGGTTTCATGCATTATAAGAAAGATTTCAGCCTGAAGTCCTGCTCATCTCCATCTTTTCAGTGACCATGTTAAACATCCCCTCTGACTACAAATCGCTCAAACAGGAACAGCTATAGAAATGCGCTGGACATCAATATCAGCCACAGCGAAGGCAGTTCTGACTCTCTGAAAATGCAAATGTGATGCCATAACATCTGCTCTGATACATTGATTGCtttgttttcatttgaaatgGCTGACAATCAGATCAGTCTGCCAGCTAAACTCATCAATGGAGGCATTGCTGGACTGATTGGCGTCACTTGTGTTTTTCCAATTGATCTGGCAAAAACACGCCTTCAAAACCAGCAAAATGGATCACGTGTATACACTAACATGTCTGACTGTCTGATGAAAACCGTGCGGTCTGAAGGATTCACTGGGATGTACAGAGGGGCTGCTGTTAATCTGGCTCTTGTGACTCCAGAAAAGGCCATCAAACTGGTCGCCAATGATTTCTTCAGACAGCAGCTCTCCAAAGACGGGGAGAAGTTGACGCTGGTTAGAGAAATGTTAGCAGGTTGTGGTGCTGGGACCTGTCAGGTGATTATAACCACTCCGATGGAGATGCTGAAGATCCAGTTGCAGGATGCCGGCAGATTAGAGGCCCAGAGGAAGATGATTGGTCCGGATGCTGTAAGGGGCCGGGCCAAAGACCGCACTGTTCATTTGAAGTCTCCCTCAGCTCTCCAGCTCTCCAGAAATCTGCTGAAGCACAAAGGCATCGCTGGTCTCTATACGGGACTGGGGGCCACTCTATTACGGGATGTGCCCTTTTCTATCATCTACTTCCCACTGTTTGCTAACCTGAATAGTCTGGGCAGAAGAAACGCTGATGGTTCGGCTCCGTTTTACATCTCTTTCCTGTCCGGCTGTTTTGCAGGCTGCGCCGCAGCGGTTGCGGTCAATCCTGTGGATGtgaTAAAGACCAGGCTTCAGTCTTTGTCCCGAGGACATCATGAGGACACTTACAGTGGAGTCAGAGACTGTATCAGTAAGATTCTCCGTCACGAGGGTCCGTCTGCTTTCTTAAAGGGGTCTTACTGTCGTGCACTGGTCATCGCGCCGCTGTTTGGCATCGTACAGGTGGTTTATTTCCTCGGAGTTGGTGAATTTGTTCTCAGCCTCCTGCACGGACAAATACACTGAATCTTTACTATGGATGGAGGTGCTGATCTTAGAACAGCTACTTGTATatgaaaggatagttcaccctaaaatgaaaatttactcattatttactaacCCTCACGAAGTTccaaagtttctttcttctgctgaaaaaaaagaaagaagatatttagaagaatgctgaaTATCTGTAACTATTAACTCCCTTAGAcggaaaaacaaatggaagtgaGTGGTTTCCAAATATTTGTTttgaacaagtggagggtgagtaaattatgacagaa

Function

symbol description
slc25a22b Predicted to enable L-aspartate transmembrane transporter activity and L-glutamate transmembrane transporter activity. Predicted to be involved in L-glutamate transmembrane transport; aspartate transmembrane transport; and malate-aspartate shuttle. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 3. Orthologous to human SLC25A22 (solute carrier family 25 member 22).

GO:

id name namespace
GO:0015810 aspartate transmembrane transport biological_process
GO:0015813 L-glutamate transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0043490 malate-aspartate shuttle biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015183 L-aspartate transmembrane transporter activity molecular_function
GO:0005313 L-glutamate transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-66 Predicted to enable L-aspartate transmembrane transporter activity and L-glutamate transmembrane transporter activity. Predicted to be involved in L-glutamate transmembrane transport; aspartate transmembrane transport; and malate-aspartate shuttle. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 3. Orthologous to human SLC25A22 (solute carrier family 25 member 22).

Ensembl:

ensembl_id ENSDARG00000058336

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065552 False 1431 mRNA 0.47 10 12976173 12999644
TCONS_00065553 True 1545 mRNA 0.45 11 12976226 12999913

Neighbor

gene id symbol gene type direction distance location
XLOC_033498 saa coding upstream 19739 12950507 ~ 12956434 (+)
XLOC_033497 fth1a coding upstream 39465 12927944 ~ 12936708 (+)
XLOC_033496 CABZ01068862.1 coding upstream 122956 12853103 ~ 12853217 (+)
XLOC_033495 cx36.7 coding upstream 139948 12835048 ~ 12836225 (+)
XLOC_033494 saxo2 coding upstream 595973 12371061 ~ 12380200 (+)
XLOC_033500 syt7b coding downstream 39513 13039426 ~ 13338283 (+)
XLOC_033501 CU571326.1 coding downstream 340230 13340143 ~ 13340268 (+)
XLOC_033502 dagla coding downstream 382939 13382852 ~ 13487378 (+)
XLOC_033503 arih1l coding downstream 491539 13491452 ~ 13514737 (+)
XLOC_033504 plekho2 coding downstream 527483 13527396 ~ 13572981 (+)
XLOC_033493 CU914775.1 non-coding upstream 803927 12172129 ~ 12172246 (+)
XLOC_033492 NA non-coding upstream 1106589 11868634 ~ 11869584 (+)
XLOC_033491 NA non-coding upstream 1156595 11689658 ~ 11819578 (+)
XLOC_033490 NA non-coding upstream 1380657 11593801 ~ 11595516 (+)
XLOC_033509 NA non-coding downstream 797731 13797644 ~ 13800139 (+)
XLOC_033511 NA non-coding downstream 862396 13862309 ~ 13865084 (+)
XLOC_033515 CU467822.1 non-coding downstream 1281180 14281093 ~ 14281225 (+)
XLOC_033517 NA non-coding downstream 1314438 14314351 ~ 14370213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01047985_00004602_00005035 SLC25A22 coding CI01047985 null 4602 ~ 5035 (-)