XLOC_033658 (rbm4.3)


Basic Information

Item Value
gene id XLOC_033658
gene name rbm4.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 22792132 ~ 22795637 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065842
ctcaTTGTGGCGAGGAGAAAGCGGCTTGGCATAACACATCTGCAAAGATGGTGAAGATCTTCATTGGTAATCTGCCTCAGCAGGCAGAAGTAGACGAATTAAAGTCTCTGTTTTCGCAATATGGAACAGTCACTGAGTGCGCCATTATCAAGAACTTTGCATTCGTCCACATGGATGATCGCAAAAGTGCCACAAAGGCTATCAAAAACCTTCATTTGTACAAGCTGCATGGAACACCCATCAATGTTGAAGCAAGTCGGGGCAAGAACCAGGGTCCAGTGAAGCTTCACGTTGCCAATGTGGAGAAGGGAACCGATGATGAACTCAGAGCACTGTTCGAAGATTATGGCACCGTTGCAGAGTGTGCCATAATTAAGAACTTTGCCTTCGTACACATGAACAACTCTGATGAAGCCATGGATGCCATCAAAGGGTTGGACAACACTGAATTCCAAGGCAAACGAATTCATGTGCAGATTTCCAAGAGCCGACCAAGAGGAGAGGAGGATGACTATGGTCACCCTGATGCTGGATACTGGCCACCCCGTTACCCCGGTGAACGCCCAGAGCCCCCTGGTTATCCTAGGGGACGCTATGGGTACCCCCCTGGCCCTCCTCCACCCCCGCCACCTCCCCCGCCCAGACGCTCCCCATACCCAGATCGTGCTGCTCCAGCATACGAGCGCCAACGCGATGTGGTTGACTATTATGAGAAGTACCGCGCTCGTCCTTACGGTGTCGCATATGATGACCGTCGTCCAGGCGGCATCCCCCCACCCCCTCCGCCCCCATCTTCCGCTATAATGAGAGATCGAATGCCTGGCAATGGCCTTGACCCCTATGAGCGACGCCCCCTCCCACCCCCGCCAGCTTCATTCTATGCACGAGACCGCAGTCCCATCAGACGCGCTCCTCCTGCCCCTCCGGCACCCGCAGGAAATGGTTACTCATATGAGCGTTCTCGTCTCTCCCCCGTCTCCATGTCTCGGGCCCCGATGTACAGCGTGCCTCGGCCCAGAGACCCCTATGCTGACAGAGCGGCGCCTCCTCCACCACCTGCGCGCTACTATTAGAGTGCACACCTGTGCTTTTGTAACCCAAGGTGTAAATTATTCAACAAGATCGTCGTCGTCGTCTCCAGGTGCACGTCCCGCGATACGTCTTTGTCTGCCAGAGCGCGTTGCGTTCGCCTGCGCACCATAGTGGAAGAGTTCTGTTGCGGACTGCACATTCTATAAAACAACCGCTTTTACACGCTTAAAATCGTCCTCATGATAAATTGTCAATtctgctattttttttattattttgcctttgtttttattgtttagctTTTTATAGGTGAGTGCAGCACTAAGCCAGATTACGTAAATTAGGTTAATTTGCTGGTTTAAAGAATAAACCCATTTAAGGGTAAGGATAAGAGTTTCTTTCAAAGAACACATGTATCACACTGTACCTTTTATCTTTAAAATCTGGATGAGTTCTTTTGTTATCAATCTACTGTAACATGCGCTATGACAGAGTTTTGATTCAGAGCTAAAAATACATTTGTGTATAAAATTTCTTTTTCCCTCTCCTTTTCCTCTCCAATACATTTGTTAGTGCGGCATGCAAGTACGAATACAGTCTCCGCAGCAATAAAACATTTTCGTTTACTGGCTTATTGAAGTTGTGCTGTAagtgtgtattttaattgcaGAATATCGCAGTTCAAAGactttgtatctttttctttcaTAGGGACAGTTGaaagttttaataaaaagacTGGAACATGGATCGTCGTTTTGCTTTTTTTGCCAACCTGTTAAATTTGCCTAAAAGGGCATAGAAGTTACCAAGCAACCTGGTTATTGAAATATTCGCATTAGAATTCATAACCCCTGGTTAGCATTACGAAGTATGGGACTGCATCTGCGGCGAAATTCCTATCATTCTATCGACACTTCGTCTGTATTTGCAATAAACCAGTGGCGTCTAAATTTATGTACTCAATGAAATCGTTTAGAATCAAGTCTATGGACTTCCCAATATTTTCATAAACAATCAATGGTTCTTTTATAAACTTAATGTATGATTTATGCCAGGTAAGTTACTTGATGTATCAAGGTTAAGCATGCATTTTATCTTGATTGTAACAAGGTGTAGGTTTATAATGCATATAGCCGTACTGCATCTACAAGTTACTTTGTAAAATAGACTTGATTCAGGCTGGCCTCCATGATTAAGGGTAAGTTTTATGTGAACAGTTAATGATTTTTCCCCCCATTTTATTCTGTCTTGTGCAAATactgcaataaaaatatataaagatg
>TCONS_00065843
TGATTTTAAATTATCACCAGcgtatataatttattatttttgacgcatgtaatgtatatatgtatagtgCGTTGAAACCCTATTAATTTACTAACCGTAAAAAAATCGTCTGATCGTCGTTATCTCGGCGCGCAACGGCTGTTCGGCTAACACTAGCTAAGCTAACAGCGTTAGCTTATTCAAACCTAAAAACGAAGTTTGCTTTTAAGGCACGGGCCATATATCAACGATCATTCGCTGTATTCCTTTTGCTTGGCATAACACATCTGCAAAGATGGTGAAGATCTTCATTGGTA
>TCONS_00065844
GGCTTGGCATAACACATCTGCAAAGATGGTGAAGATCTTCATTGGTAATCTGCCTCAGCAGGCAGAAGTAGACGAATTAAAGTCTCTGTTTTCGCAATATGGAACAGTCACTGAGTGCGCCATTATCAAGAACTTTGCATTCGTCCACATGGATGATCGCAAAAGTGCCACAAAGGCTATCAAAAACCTTCATTTGTACAAGCTGCATGGAACACCCATCAATGTTGAAGCAAGTCGGGGCAAGAACCAGGGTCCAGTGAAGCTTCACGTTGCCAATGTGGAGAAGGGAACCGATGATGAACTCAGAGCACTGTTCGAAGATTATGGCACCGTTGCAGAGTGTGCCATAATTAAGAACTTTGCCTTCGTACACATGAACAACTCTGATGAAGCCATGGATGCCATCAAAGGGTTGGACAACACTGAATTCCAAGGCAAACGAATTCATGTGCAGATTTCCAAGAGCCGACCAAGAGGAGAGGAGGATGACTATGGTCACCCTGATGCTGGATACTGGCCACCCCGTTACCCCGGTGAACGCCCAGAGCCCCCTGGTTATCCTAGGGGACGCTATGGGTACCCCCCTGGCCCTCCTCCACCCCCGCCACCTCCCCCGCCCAGACGCTCCCCATACCCAGATCGTGCTGCTCCAGCATACGAGCGCCAACGCGATGTGGTTGACTATTATGAGAAGTACCGCGCTCGTCCTTACGGTGTCGCATATGATGACCGTCGTCCAGGCGGCATCCCCCCACCCCCTCCGCCCCCATCTTCCGCTATAATGAGAGATCGAATGCCTGGCAATGGCCTTGACCCCTATGAGCGACGCCCCCTCCCACCCCCGCCAGCTTCATTCTATGCACGAGACCGCAGTCCCATCAGACGCGCTCCTCCTGCCCCTCCGGCACCCGCAGGAAATGGTTACTCATATGAGCGTTCTCGTCTCTCCCCCGTCTCCATGTCTCGGGCCCCGATGTACAGCGTGCCTCGGCCCAGAGACCCCTATGCTGACAGAGCGGCGCCTCCTCCACCACCTGCGCGCTACTATTAGAGTGCACACCTGTGCTTTTGTAACCCAAGGTGTAAATTATTCAACAAGATCGTCGTCGTCGTCTCCAGGTGCACGTCCCGCGATACGTCTTTGTCTGCCAGAGCGCGTTGCGTTCGCCTGCGCACCATAGTGGAAGAGTTCTGTTGCGGACTGCACATTCTATAAAACAACCGCTTTTACACGCTTAAAATCGTCCTCATGATAAATTGTCAATtctgctattttttttattattttgcctttgtttttattgtttagctTTTTATAGGTGAGTGCAGCACTAAGCCAGATTACGTAAATTAGGTTAATTTGCTGGTTTAAAGAATAAACCCATTTAAGGGTAAGGATAAGAGTTTCTTTCAAAGAACACATGTATCACACTGTACCTTTTATCTTTAAAATCTGGATGAGTTCTTTTGTTATCAATCTACTGTAACATGCGCTATGACAGAGTTTTGATTCAGAGCTAAAAATACATTTGTGTATAAAATTTCTTTTTCCCTCTCCTTTTCCTCTCCAATACATTTGTTAGTGCGGCATGCAAGTACGAATACAGTCTCCGCAGCAATAAAACATTTTCGTTTACTGGCTTATTGAAGTTGTGCTGTAagtgtgtattttaattgcaGAATATCGCAGTTCAAAGactttgtatctttttctttcaTAGGGACAGTTGaaagttttaataaaaagacTGGAACATG

Function

symbol description
rbm4.3 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human RBM4 (RNA binding motif protein 4).

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1938 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human RBM4 (RNA binding motif protein 4).

Ensembl:

ensembl_id ENSDARG00000022129

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065842 False 2318 mRNA 0.45 4 22792132 22795637
TCONS_00065843 False 296 mRNA 0.37 2 22792192 22792941
TCONS_00065844 True 1758 mRNA 0.48 3 22792895 22795099

Neighbor

gene id symbol gene type direction distance location
XLOC_033657 ponzr6 coding upstream 19000 22767678 ~ 22773132 (+)
XLOC_033656 fxr2 coding upstream 31042 22718251 ~ 22761090 (+)
XLOC_033655 si:dkey-165a24.9 coding upstream 79305 22702224 ~ 22712827 (+)
XLOC_033654 ugt5g1 coding upstream 95145 22688781 ~ 22696987 (+)
XLOC_033653 ponzr4 coding upstream 107840 22680560 ~ 22684292 (+)
XLOC_033659 rbm4.2 coding downstream 446 22796083 ~ 22801248 (+)
XLOC_033660 rbm4.1 coding downstream 5828 22801465 ~ 22806803 (+)
XLOC_033661 sf1 coding downstream 14268 22809905 ~ 22820816 (+)
XLOC_033662 pygmb coding downstream 28252 22823889 ~ 22852189 (+)
XLOC_033663 clcn5b coding downstream 58151 22853788 ~ 22900344 (+)
XLOC_033649 BX649313.1 non-coding upstream 136680 22632049 ~ 22655452 (+)
XLOC_033650 NA non-coding upstream 152758 22637209 ~ 22639374 (+)
XLOC_033645 NA non-coding upstream 254797 22438447 ~ 22537335 (+)
XLOC_033638 NA non-coding upstream 917786 21859218 ~ 21874346 (+)
XLOC_033636 NA non-coding upstream 960851 21820301 ~ 21831281 (+)
XLOC_033665 BX957325.1 non-coding downstream 218309 23013946 ~ 23153185 (+)
XLOC_033666 CR352332.1 non-coding downstream 489398 23285035 ~ 23285151 (+)
XLOC_033668 dre-mir-730 non-coding downstream 566525 23362162 ~ 23362245 (+)
XLOC_033670 NA non-coding downstream 768111 23563748 ~ 23564568 (+)
XLOC_033672 NA non-coding downstream 952842 23748479 ~ 23757190 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000161_00165383_00166503 RBM4B, RBM4.3 coding CI01000161 null 164996 ~ 167500 (+)