XLOC_033656 (fxr2)


Basic Information

Item Value
gene id XLOC_033656
gene name fxr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 22718251 ~ 22761090 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065838
AGTCTTGCTGCTCCACTCTGACGGCGTGTGTTGGAGGGGAAGGGTGAAGTAGCACAGCATCACAGTCTTATCAAAGAACAGACGTCCTAATCAACAGCGTTTTCAGAAATAACATAGAGGATTTTTACGAGAATCATCCCGACATATGCAGGAGCCGCGAGATCAAGTGCCAGAAGGTGTCGGTGCCCGTTGATTAGCGGCTGCGCTAGCTGTTGTGCTAACACCTCGTTTACATCCACCGTCATCAGACAGCATCAGTCCAGCTCCAGACCGGCCACTAACGGCACTCCCGCGAGCTTCCCTCGCGCTGTAGGCAGCCGTTTTCGAGTTGGCTTGCCTTGCTGTAAGGGGTGTCGGAGCTGAACCCCCTCCCTGTGGCTCCTGTGTTCCCCCGTCACCTTTGCCCCCTCTCTCACCCGAAACACTGGACACACACAAGCGGCCGGAGAACGGCGAGAGGCCCGTGAAGCTGGGGGTGGTACCGGACTCGCACGCTATCGTAGCGCCTAAAGAGAGGCACAGCCGTGGGGAAGCGACGACGAACATGGACGGGTTGGCGGTGGAGGTGCGCGGCTCCAACGGGGCCTTCTACAAGGGTTTCATCAAAGATGTACACGAAGACTCCCTCACAATAGTCTTTGAAAACAACTGGCAACCGGAGAGACAGCTGCCGTTCAGTGACGTGAGGTTGCCGCCCCCAACCGATTACCACAAGGACATTTGTGAGGGAGATGAGGTGGAGGTTTACTCCAGAGCCAATGAGCAGGAGCCCTGCGGCTGGTGGCTAGCGAGGGTGAGGATGATGAAGGGAGAGTTCTATGTGATCGAGTATGCAGCCTGCGACGCCACATACAATGAAATTGTCACATCAGAGCGAATCCGGCCTGTCAATCCCAACAGCCCCTCGGCTCAAAACTCCTTCTACAAAGTCCCCATCGCTGTACCAGAGGATCTCAGAGACATCTGTTTGACCGAAAATATCCACAAAGACTTCAGGAAAGCTATCGGAGCAAATTGCATCTTCTATAACACCTCTACACACCAACTAATTGTCCTGTCTACAAATGAGTCTACAGTGAAACGAGCTGGGCTACTGAGTGACATGCACTTCCGGAGTATTCGCACCAAACTCATGCTGATGTCCCGCAACGAGGAGGCCACCAAACACTTAGAGACAAGTAAACAGCTGGCGTCTGCGTATCAGGAGGAAGTGAAGGTGCGCGAGGATCTAATGGGTCTGGCTATTGGCTCGCATGGCGCCAACATCCAGCAGGCCCGCAAGGTTCCCGGTGTCACCGCCATCGAGCTGGAAGAAGAGAGCTGCACATTTCGCATCTATGGAGAGACCCCAGAGGCAGTCAAACAGGCCAGAACGTATCTGGAGTTTAAAGAGGATTCTTTCCCAGTGCCAAGGAATCTAGTAGGAAAAGTTATTGGCAAAAATGGCAAAATTATCCAGGAAATAGTCGACAAATCGGGTGTGGTTCGGGTTCGGATTGAAGGGGACAATGATAAAAAGCTGCCCAGGGAGGAGGGAGGCAGGCAGGGGGCTGGCAGAGACAACATTGTCAGCAGCCAAGAGggAACGGTTCCCTTTATCTTTGTTGGAACTAAAGAGAACATCAGCAATGCCCAGGCCTTGCTTGAATACCATGTAGCCTACCTCCAGGAGGTGGAGCAGCTGCGTCTGGAGCGTCTGCAGATCGATGAGCAGCTTCGTCAGATCGGCGTGGGATATCGAGCTCCCCCAAGTCGCTCTGGTTCAGGTGTTGCGGGTGAGCGGGAGCGAGGTTACCTCACAGACGAGAGCACCAACTCCCTGCAGACCACACGCACATATGGAGGAAGAGGACGCGGACGCAAACCGAACAATACATACTCCGGCTATGGAACTAACTCTGAGATGTCCAATGCATCAGAGACGGAGGATTTGGGGGATCGGGAGTCCAGGCCTAAAGGGGTTGGAGCAGATGATCGGGGTTCGAAGCGTGGAGGTCGAGGCCGTGGCTCCAGCGCTGGCAGGGGCCGTGGAGGACCAGGACTCAGAAACATTAACACTATCAGCTCAGTCCTCCGAGATCCGGACAGTAACCCATACTCTCTGCTGGAGGGTGAAGGTGAACAGGGCGGTGATACAGATGCTAGCGAGAGCATGGGTGGTATTGACCGCAGAAGACGCTCACGTCGCCGCCGTAATGACCTGGAACCAAGCCTTATGGATGCAGCCGCTAATGAATCAGACGGTCAGGGTGCCACAAGCGAAAATGGACTGGAAGAGGAGGGCAGGCCTCAGCGCCGCAATCGAAGCCGCCGCCGCCGTAATCGTGCCAACCGTCCTGAAGGAGGCTCCACCAGCCGTGACCGACAGCCAGTTACTGTTGCTGACTTCATCTCTCGTGCCGAGTCCCAGAGCAGACAGAATCTCCCGGGGAAGGAGGCCAACCCACACGTGTCCCATCCTAAGGAAAACGGGACCAGCGTGAGTAAGGAAGAGCGCACTCCTTCAAAGCGCTCGCCCAGTAACGGCGTGGCGTCGCCCGGTGAGGCTCTGGCCATGGTGAACGGCGTCTCCTAAAAAGTCATCTCGCCCCCTCAAGACCCACGTCTAAAGCAAGACACCATGGCGAACTCTGTCCCTGCTTGCATTCACGTAAACCTTTAAACTGACGAATGAAAATCGACTAAAATCCTTGAATTCATGAAGTCTacgagaaaacaaaaaaaaaaaagtaaaaatacgaCGAGCGCATCTACTTTAAACCACACATAACGGTGTATGTTTATCCTATCTATCAGTACTTAGTGCTTATTTAAGACAAGCTTGCCAAAAATGAGCTGATGGATATGACTCAAATTTCTGACGTAACACAGAAAACAGGACGTGACTATTTTGgggttttgttttagatttttttagttttcGTTGTTGCTGTTGTCGTTGCCGTCATTATTtgttttcgtttgtttgtttgtactcACTGGCGTGGGATTGTGAACACACTCCCCAACAGATATAGCATCTCTGAAAACAGTGTTAGCTAAATGAGGGCGGAGCTAGCGGAGAGGATTGAAGGCGGAGCCTCTCacaagtgattgacagctgagtCTGTGGTACTCTGAATTTAAGGGCAAAAAGGGGAAGCGGAGAGACATTGTGCcttgaatttgaaaaaaaaaaacttgagtatTTTCTTTTTACCTTAACGTTTGCGTTCTCGACTGGATGAAGTAGATGGTTCCGTTTTgtttttggtgtttttattttgtctaaaGGATGGAGAGGATTGTGCGGATTAAGAGGAGTGCGGATTTTGGGGGAGAAGAGCGATAATTAATGCCAAACATGAAATTATGACATTTGTCCAAGGTCGTTATTTGAAAGccgtttaatgtgtgtgtgtgtgtgtgtgtacgagtGAGTGTCTGTTTGTTCATGTGTTGTTGTGAGACATGAAGTAAAAGTGTATAAATTGGGAAGGACGTCACATGATCCAGGAGACGACAGTAGAATCCCAAATGTGATTCGATCTCTCTGATTGAGGTGGCACAAGTCTTTCCCAATAGAACAAGACCGAGACGGAAACAATCTAACAGACAGTGTTGATCATATTCAGTATTTCAACAGCCCACCATACGGTTATAAGGAGAAGGGAGGCAGGATTATTGTGAGTGTAAAAGCTGGCATGCGTGTGCACACACACTCTCGGTAGCTTCCAGCCACCGCTGTCTGAAGGGCTGGATGGGGTTGAGGCCTCACCGGCGCCCCCTCTGGTGTGGATGGTTGGTCTTCGGTAAACAGTGAAACCCTTTTCTGATGAAGAGTCAGGCattcgttcacacacatacatgcatacatccgAGAGCATTGTAATACACTCCAGTGTGCAGGAATGGAGCTTGGGTCTCTGCTCAGGAGGTTCAAGCGTTGGTTGTATTTCTGGTTGTCCCGATGAAAAGGGGAGGATTGTTCCCTTGCTGTTACTTGTCATCTTGGTTCCTGCTCtcaaagattgtttttttttcttttcttttttggttgTACTTTCCACatcatgaaaaaacaaaaaagattaaaaaGGAAGTGAAATAAATTATTTCTGGAATGA
>TCONS_00065839
GTTGGAGGGGAAGGGTGAAGTAGCACAGCATCACAGTCTTATCAAAGAACAGACGTCCTAATCAACAGCGTTTTCAGAAATAACATAGAGGATTTTTACGAGAATCATCCCGACATATGCAGGAGCCGCGAGATCAAGTGCCAGAAGGTGTCGGTGCCCGTTGATTAGCGGCTGCGCTAGCTGTTGTGCTAACACCTCGTTTACATCCACCGTCATCAGACAGCATCAGTCCAGCTCCAGACCGGCCACTAACGGCACTCCCGCGAGCTTCCCTCGCGCTGTAGGCAGCCGTTTTCGAGTTGGCTTGCCTTGCTGTAAGGGGTGTCGGAGCTGAACCCCCTCCCTGTGGCTCCTGTGTTCCCCCGTCACCTTTGCCCCCTCTCTCACCCGAAACACTGGACACACACAAGCGGCCGGAGAACGGCGAGAGGCCCGTGAAGCTGGGGGTGGTACCGGACTCGCACGCTATCGTAGCGCCTAAAGAGAGGCACAGCCGTGGGGAAGCGACGACGAACATGGACGGGTTGGCGGTGGAGGTGCGCGGCTCCAACGGGGCCTTCTACAAGGGTTTCATCAAAGATGTACACGAAGACTCCCTCACAATAGTCTTTGAAAACAACTGGCAACCGGAGAGACAGCTGCCGTTCAGTGACGTGAGGTTGCCGCCCCCAACCGATTACCACAAGGACATTTGTGAGGGAGATGAGGTGGAGGTTTACTCCAGAGCCAATGAGCAGGAGCCCTGCGGCTGGTGGCTAGCGAGGGTGAGGATGATGAAGGGAGAGTTCTATGTGATCGAGTATGCAGCCTGCGACGCCACATACAATGAAATTGTCACATCAGAGCGAATCCGGCCTGTCAATCCCAACAGCCCCTCGGCTCAAAACTCCTTCTACAAAGTCCCCATCGCTGTACCAGAGGATCTCAGAGACATCTGTTTGACCGAAAATATCCACAAAGACTTCAGGAAAGCTATCGGAGCAAATTGCATCTTCTATAACACCTCTACACACCAACTAATTGTCCTGTCTACAAATGAGTCTACAGTGAAACGAGCTGGGCTACTGAGTGACATGCACTTCCGGAGTATTCGCACCAAACTCATGCTGATGTCCCGCAACGAGGAGGCCACCAAACACTTAGAGACAAGTAAACAGCTGGCGTCTGCGTATCAGGAGGAAGTGAAGGTGCGCGAGGATCTAATGGGTCTGGCTATTGGCTCGCATGGCGCCAACATCCAGCAGGCCCGCAAGGTTCCCGGTGTCACCGCCATCGAGCTGGAAGAAGAGAGCTGCACATTTCGCATCTATGGAGAGACCCCAGAGGCAGTCAAACAGGCCAGAACGTATCTGGAGTTTAAAGAGGATTCTTTCCCAGTGCCAAGGAATCTAGTAGGAAAAGTTATTGGCAAAAATGGCAAAATTATCCAGGAAATAGTCGACAAATCGGGTGTGGTTCGGGTTCGGATTGAAGGGGACAATGATAAAAAGCTGCCCAGGGAGGAGGGAGGCAGGCAGGGGGCTGGCAGAGACAACATTGTCAGCAGCCAAGAGggAACGGTTCCCTTTATCTTTGTTGGAACTAAAGAGAACATCAGCAATGCCCAGGCCTTGCTTGAATACCATGTAGCCTACCTCCAGGAGGTGGAGCAGCTGCGTCTGGAGCGTCTGCAGATCGATGAGCAGCTTCGTCAGATCGGCGTGGGATATCGAGCTCCCCCAAGTCGCTCTGGTTCAGGTGTTGCGGGTGAGCGGGAGCGAGGTTACCTCACAGACGAGAGCACCAACTCCCTGCAGACCACACGCACATATGGAGGAAGAGGACGCGGACGCAAACCGAACAATACATACTCCGGCTATGGAACTAACTCTGAGATGTCCAATGCATCAGAGACGGAGGATTTGGGGGATCGGGAGTCCAGGCCTAAAGGGGTTGGAGCAGATGATCGGGGTTCGAAGCGTGGAGGTCGAGGCCGTGGCTCCAGCGCTGGCAGGGGCCGTGGAGGACCAGGACTCAGAAACATTAACACTATCAGCTCAGTCCTCCGAGATCCGGACAGTAACCCATACTCTCTGCTGGAGGGTGAAGGTGAACAGGGCGGTGATACAGATGCTAGCGAGAGCATGGGTGGTATTGACCGCAGAAGACGCTCACGTCGCCGCCGTAATGACCTGGAACCAAGCCTTATGGATGCAGCCGCTAATGAATCAGACGGTCAGGGTGCCACAAGCGAAAATGGACTGGGAAAACGGGACCAGCGTGAGTAAGGAAGAGCGCACTCCTTCAAAGCGCTCGCCCAGTAACGGCGTGGCGTCGCCCGGTGAGGCTCTGGCCATGGTGAACGGCGTCTCCTAAAAAGTCATCTCGCCCCCTCAAGACCCACGTCTAAAGCAAGACACCATGGCGAACTCTGTCCCTGCTTGCATTCACGTAAACCTTTAAACTGACGAATGAAAATCGACTAAAATCCTTGAATTCATGAAGTCTacgagaaaacaaaaaaaaaaaagtaaaaatacga
>TCONS_00065840
AGATGTCCAATGCATCAGAGACGGAGGATTTGGGGGATCGGGAGTCCAGGCCTAAAGGGGTTGGAGCAGATGATCGGGGTTCGAAGCGTGGAGGTCGAGGCCGTGGCTCCAGCGCTGGCAGGGGCCGTGGAGGACCAGGACTCAGAAACATTAACACTATCAGCTCAGTCCTCCGAGATCCGGACAGTAACCCATACTCTCTGCTGGAGGGTGAAGGTGAACAGGGCGGTGATACAGATGCTAGCGAGAGCATGGGTGGTATTGACCGCAGAAGACGCTCACGTCGCCGCCGTAATGACCTGGAACCAAGCCTTATGGATGCAGCCGCTAATGAATCAGACGGTCAGGGTGCCACAAGCGAAAATGGACTGGTTACTGTTGCTGACTTCATCTCTCGTGCCGAGTCCCAGAGCAGACAGAATCTCCCGGGGAAGGAGGCCAACCCACACGTGTCCCATCCTAAGGAAAACGGGACCAGCGTGAGTAAGGAAGAGCGCACTCCTTCAAAGCGCTCGCCCAGTAACGGCGTGGCGTCGCCCGGTGAGGCTCTGGCCATGGTGAACGGCGTCTCCTAAAAAGTCATCTCGCCCCCTCAAGACCCACGTCTAAAGCAAGACACCATGGCGAACTCTGTCCCTGCTTGCATTCACGTAAACCTTTAAACTGACGAATGAAAATCGACTAAAATCCTTGAATTCATGAAGTCTacgagaaaacaaaaaaaaaaaa

Function

symbol description
fxr2 Predicted to enable mRNA 3'-UTR binding activity; protein homodimerization activity; and translation regulator activity. Predicted to be involved in several processes, including positive regulation of response to DNA damage stimulus; regulation of filopodium assembly; and regulation of gene expression. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm. Predicted to be part of polysome. Predicted to be active in several cellular components, including dendrite; growth cone; and postsynaptic density. Is expressed in mesoderm; musculature system; and somite. Orthologous to human FXR2 (FMR1 autosomal homolog 2).

GO:

id name namespace
GO:0045727 positive regulation of translation biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:2001022 positive regulation of response to DNA damage stimulus biological_process
GO:0051489 regulation of filopodium assembly biological_process
GO:0006417 regulation of translation biological_process
GO:0017148 negative regulation of translation biological_process
GO:0043488 regulation of mRNA stability biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005844 polysome cellular_component
GO:0005634 nucleus cellular_component
GO:1902737 dendritic filopodium cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0043197 dendritic spine cellular_component
GO:0044326 dendritic spine neck cellular_component
GO:0098793 presynapse cellular_component
GO:0005737 cytoplasm cellular_component
GO:0045182 translation regulator activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-943 Predicted to enable mRNA 3'-UTR binding activity; protein homodimerization activity; and translation regulator activity. Predicted to be involved in several processes, including positive regulation of response to DNA damage stimulus; regulation of filopodium assembly; and regulation of gene expression. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm. Predicted to be part of polysome. Predicted to be active in several cellular components, including dendrite; growth cone; and postsynaptic density. Is expressed in mesoderm; musculature system; and somite. Orthologous to human FXR2 (FMR1 autosomal homolog 2).

Ensembl:

ensembl_id ENSDARG00000016260

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065838 False 4106 mRNA 0.50 17 22718251 22761090
TCONS_00065839 False 2521 mRNA 0.54 15 22718280 22759725
TCONS_00065840 True 729 mRNA 0.54 4 22747915 22759713

Neighbor

gene id symbol gene type direction distance location
XLOC_033655 si:dkey-165a24.9 coding upstream 5424 22702224 ~ 22712827 (+)
XLOC_033654 ugt5g1 coding upstream 21264 22688781 ~ 22696987 (+)
XLOC_033653 ponzr4 coding upstream 33959 22680560 ~ 22684292 (+)
XLOC_033652 ponzr3 coding upstream 41040 22675475 ~ 22677211 (+)
XLOC_033651 ponzr5 coding upstream 54280 22657566 ~ 22663971 (+)
XLOC_033657 ponzr6 coding downstream 6588 22767678 ~ 22773132 (+)
XLOC_033658 rbm4.3 coding downstream 31042 22792132 ~ 22795637 (+)
XLOC_033659 rbm4.2 coding downstream 34993 22796083 ~ 22801248 (+)
XLOC_033660 rbm4.1 coding downstream 40375 22801465 ~ 22806803 (+)
XLOC_033661 sf1 coding downstream 48815 22809905 ~ 22820816 (+)
XLOC_033649 BX649313.1 non-coding upstream 62799 22632049 ~ 22655452 (+)
XLOC_033650 NA non-coding upstream 78877 22637209 ~ 22639374 (+)
XLOC_033645 NA non-coding upstream 180916 22438447 ~ 22537335 (+)
XLOC_033638 NA non-coding upstream 843905 21859218 ~ 21874346 (+)
XLOC_033636 NA non-coding upstream 886970 21820301 ~ 21831281 (+)
XLOC_033665 BX957325.1 non-coding downstream 252856 23013946 ~ 23153185 (+)
XLOC_033666 CR352332.1 non-coding downstream 523945 23285035 ~ 23285151 (+)
XLOC_033668 dre-mir-730 non-coding downstream 601072 23362162 ~ 23362245 (+)
XLOC_033670 NA non-coding downstream 802658 23563748 ~ 23564568 (+)
XLOC_033672 NA non-coding downstream 987389 23748479 ~ 23757190 (+)

Expression


Co-expression Network