RNA id: TCONS_00065839


Basic Information

Item Value
RNA id TCONS_00065839
length 2521
RNA type mRNA
GC content 0.54
exon number 15
gene id XLOC_033656
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 22718251 ~ 22761090 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGGAGGGGAAGGGTGAAGTAGCACAGCATCACAGTCTTATCAAAGAACAGACGTCCTAATCAACAGCGTTTTCAGAAATAACATAGAGGATTTTTACGAGAATCATCCCGACATATGCAGGAGCCGCGAGATCAAGTGCCAGAAGGTGTCGGTGCCCGTTGATTAGCGGCTGCGCTAGCTGTTGTGCTAACACCTCGTTTACATCCACCGTCATCAGACAGCATCAGTCCAGCTCCAGACCGGCCACTAACGGCACTCCCGCGAGCTTCCCTCGCGCTGTAGGCAGCCGTTTTCGAGTTGGCTTGCCTTGCTGTAAGGGGTGTCGGAGCTGAACCCCCTCCCTGTGGCTCCTGTGTTCCCCCGTCACCTTTGCCCCCTCTCTCACCCGAAACACTGGACACACACAAGCGGCCGGAGAACGGCGAGAGGCCCGTGAAGCTGGGGGTGGTACCGGACTCGCACGCTATCGTAGCGCCTAAAGAGAGGCACAGCCGTGGGGAAGCGACGACGAACATGGACGGGTTGGCGGTGGAGGTGCGCGGCTCCAACGGGGCCTTCTACAAGGGTTTCATCAAAGATGTACACGAAGACTCCCTCACAATAGTCTTTGAAAACAACTGGCAACCGGAGAGACAGCTGCCGTTCAGTGACGTGAGGTTGCCGCCCCCAACCGATTACCACAAGGACATTTGTGAGGGAGATGAGGTGGAGGTTTACTCCAGAGCCAATGAGCAGGAGCCCTGCGGCTGGTGGCTAGCGAGGGTGAGGATGATGAAGGGAGAGTTCTATGTGATCGAGTATGCAGCCTGCGACGCCACATACAATGAAATTGTCACATCAGAGCGAATCCGGCCTGTCAATCCCAACAGCCCCTCGGCTCAAAACTCCTTCTACAAAGTCCCCATCGCTGTACCAGAGGATCTCAGAGACATCTGTTTGACCGAAAATATCCACAAAGACTTCAGGAAAGCTATCGGAGCAAATTGCATCTTCTATAACACCTCTACACACCAACTAATTGTCCTGTCTACAAATGAGTCTACAGTGAAACGAGCTGGGCTACTGAGTGACATGCACTTCCGGAGTATTCGCACCAAACTCATGCTGATGTCCCGCAACGAGGAGGCCACCAAACACTTAGAGACAAGTAAACAGCTGGCGTCTGCGTATCAGGAGGAAGTGAAGGTGCGCGAGGATCTAATGGGTCTGGCTATTGGCTCGCATGGCGCCAACATCCAGCAGGCCCGCAAGGTTCCCGGTGTCACCGCCATCGAGCTGGAAGAAGAGAGCTGCACATTTCGCATCTATGGAGAGACCCCAGAGGCAGTCAAACAGGCCAGAACGTATCTGGAGTTTAAAGAGGATTCTTTCCCAGTGCCAAGGAATCTAGTAGGAAAAGTTATTGGCAAAAATGGCAAAATTATCCAGGAAATAGTCGACAAATCGGGTGTGGTTCGGGTTCGGATTGAAGGGGACAATGATAAAAAGCTGCCCAGGGAGGAGGGAGGCAGGCAGGGGGCTGGCAGAGACAACATTGTCAGCAGCCAAGAGggAACGGTTCCCTTTATCTTTGTTGGAACTAAAGAGAACATCAGCAATGCCCAGGCCTTGCTTGAATACCATGTAGCCTACCTCCAGGAGGTGGAGCAGCTGCGTCTGGAGCGTCTGCAGATCGATGAGCAGCTTCGTCAGATCGGCGTGGGATATCGAGCTCCCCCAAGTCGCTCTGGTTCAGGTGTTGCGGGTGAGCGGGAGCGAGGTTACCTCACAGACGAGAGCACCAACTCCCTGCAGACCACACGCACATATGGAGGAAGAGGACGCGGACGCAAACCGAACAATACATACTCCGGCTATGGAACTAACTCTGAGATGTCCAATGCATCAGAGACGGAGGATTTGGGGGATCGGGAGTCCAGGCCTAAAGGGGTTGGAGCAGATGATCGGGGTTCGAAGCGTGGAGGTCGAGGCCGTGGCTCCAGCGCTGGCAGGGGCCGTGGAGGACCAGGACTCAGAAACATTAACACTATCAGCTCAGTCCTCCGAGATCCGGACAGTAACCCATACTCTCTGCTGGAGGGTGAAGGTGAACAGGGCGGTGATACAGATGCTAGCGAGAGCATGGGTGGTATTGACCGCAGAAGACGCTCACGTCGCCGCCGTAATGACCTGGAACCAAGCCTTATGGATGCAGCCGCTAATGAATCAGACGGTCAGGGTGCCACAAGCGAAAATGGACTGGGAAAACGGGACCAGCGTGAGTAAGGAAGAGCGCACTCCTTCAAAGCGCTCGCCCAGTAACGGCGTGGCGTCGCCCGGTGAGGCTCTGGCCATGGTGAACGGCGTCTCCTAAAAAGTCATCTCGCCCCCTCAAGACCCACGTCTAAAGCAAGACACCATGGCGAACTCTGTCCCTGCTTGCATTCACGTAAACCTTTAAACTGACGAATGAAAATCGACTAAAATCCTTGAATTCATGAAGTCTacgagaaaacaaaaaaaaaaaagtaaaaatacga

Function

GO:

id name namespace
GO:0045727 positive regulation of translation biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:2001022 positive regulation of response to DNA damage stimulus biological_process
GO:0051489 regulation of filopodium assembly biological_process
GO:0006417 regulation of translation biological_process
GO:0017148 negative regulation of translation biological_process
GO:0043488 regulation of mRNA stability biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005844 polysome cellular_component
GO:0005634 nucleus cellular_component
GO:1902737 dendritic filopodium cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0043197 dendritic spine cellular_component
GO:0044326 dendritic spine neck cellular_component
GO:0098793 presynapse cellular_component
GO:0005737 cytoplasm cellular_component
GO:0045182 translation regulator activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-943 Predicted to enable mRNA 3'-UTR binding activity; protein homodimerization activity; and translation regulator activity. Predicted to be involved in several processes, including positive regulation of response to DNA damage stimulus; regulation of filopodium assembly; and regulation of gene expression. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm. Predicted to be part of polysome. Predicted to be active in several cellular components, including dendrite; growth cone; and postsynaptic density. Is expressed in mesoderm; musculature system; and somite. Orthologous to human FXR2 (FMR1 autosomal homolog 2).

Ensembl:

ensembl_id ENSDART00000143341

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065834 lncRNA upstream 11338 22702224 ~ 22706942 (+) False XLOC_033655
TCONS_00065830 lncRNA upstream 41153 22675830 ~ 22677127 (+) True XLOC_033652
TCONS_00065828 lncRNA upstream 58031 22657687 ~ 22660249 (+) True XLOC_033651
TCONS_00065826 lncRNA upstream 78906 22637209 ~ 22639374 (+) False XLOC_033650
TCONS_00065847 lncRNA downstream 36551 22796276 ~ 22797597 (+) False XLOC_033659
TCONS_00065852 lncRNA downstream 41770 22801495 ~ 22803654 (+) True XLOC_033660
TCONS_00065857 lncRNA downstream 57547 22817272 ~ 22818997 (+) True XLOC_033661
TCONS_00065866 lncRNA downstream 227195 22986920 ~ 22991359 (+) True XLOC_033664
TCONS_00065867 lncRNA downstream 254221 23013946 ~ 23153185 (+) True XLOC_033665
TCONS_00065835 mRNA upstream 5453 22702225 ~ 22712827 (+) False XLOC_033655
TCONS_00065836 mRNA upstream 8692 22702437 ~ 22709588 (+) False XLOC_033655
TCONS_00065837 mRNA upstream 8692 22705656 ~ 22709588 (+) True XLOC_033655
TCONS_00065832 mRNA upstream 21293 22688781 ~ 22696987 (+) False XLOC_033654
TCONS_00065833 mRNA upstream 21294 22691961 ~ 22696986 (+) True XLOC_033654
TCONS_00065841 mRNA downstream 7953 22767678 ~ 22773132 (+) True XLOC_033657
TCONS_00065842 mRNA downstream 32407 22792132 ~ 22795637 (+) False XLOC_033658
TCONS_00065843 mRNA downstream 32467 22792192 ~ 22792941 (+) False XLOC_033658
TCONS_00065844 mRNA downstream 33170 22792895 ~ 22795099 (+) True XLOC_033658
TCONS_00065846 mRNA downstream 36392 22796117 ~ 22801248 (+) False XLOC_033659
TCONS_00065803 other upstream 965519 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other upstream 965519 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065791 other upstream 2066549 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065774 other upstream 2246917 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065712 other upstream 3691210 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065845 other downstream 36358 22796083 ~ 22800865 (+) False XLOC_033659
TCONS_00065856 other downstream 50223 22809948 ~ 22820816 (+) False XLOC_033661
TCONS_00065868 other downstream 525310 23285035 ~ 23285151 (+) True XLOC_033666
TCONS_00065870 other downstream 602437 23362162 ~ 23362245 (+) True XLOC_033668
TCONS_00065890 other downstream 1274176 24033901 ~ 24040056 (+) True XLOC_033679

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000161_00017834_00033612.mRNA True 1315 mRNA 0.52 10 CI01000161 17834 ~ 33666 (+)