Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00065847 |
| length | 750 |
| lncRNA type | retained_intron |
| GC content | 0.46 |
| exon number | 2 |
| gene id | XLOC_033659 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 22796083 ~ 22801248 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | biological_process |
| GO:0045292 | mRNA cis splicing, via spliceosome | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-3019 | Enables mRNA 3'-UTR binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Orthologous to several human genes including RBM4 (RNA binding motif protein 4). |
| ensembl_id | ENSDART00000133632 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00065834 | lncRNA | upstream | 89334 | 22702224 ~ 22706942 (+) | False | XLOC_033655 |
| TCONS_00065830 | lncRNA | upstream | 119149 | 22675830 ~ 22677127 (+) | True | XLOC_033652 |
| TCONS_00065828 | lncRNA | upstream | 136027 | 22657687 ~ 22660249 (+) | True | XLOC_033651 |
| TCONS_00065825 | lncRNA | upstream | 140824 | 22632049 ~ 22655452 (+) | True | XLOC_033649 |
| TCONS_00065852 | lncRNA | downstream | 3898 | 22801495 ~ 22803654 (+) | True | XLOC_033660 |
| TCONS_00065857 | lncRNA | downstream | 19675 | 22817272 ~ 22818997 (+) | True | XLOC_033661 |
| TCONS_00065866 | lncRNA | downstream | 189323 | 22986920 ~ 22991359 (+) | True | XLOC_033664 |
| TCONS_00065867 | lncRNA | downstream | 216349 | 23013946 ~ 23153185 (+) | True | XLOC_033665 |
| TCONS_00068571 | lncRNA | downstream | 766151 | 23563748 ~ 23564568 (+) | True | XLOC_033670 |
| TCONS_00065842 | mRNA | upstream | 639 | 22792132 ~ 22795637 (+) | False | XLOC_033658 |
| TCONS_00065844 | mRNA | upstream | 1177 | 22792895 ~ 22795099 (+) | True | XLOC_033658 |
| TCONS_00065843 | mRNA | upstream | 3335 | 22792192 ~ 22792941 (+) | False | XLOC_033658 |
| TCONS_00065841 | mRNA | upstream | 23144 | 22767678 ~ 22773132 (+) | True | XLOC_033657 |
| TCONS_00065838 | mRNA | upstream | 35186 | 22718251 ~ 22761090 (+) | False | XLOC_033656 |
| TCONS_00065850 | mRNA | downstream | 3868 | 22801465 ~ 22806803 (+) | False | XLOC_033660 |
| TCONS_00065851 | mRNA | downstream | 3871 | 22801468 ~ 22806803 (+) | False | XLOC_033660 |
| TCONS_00065853 | mRNA | downstream | 12308 | 22809905 ~ 22820816 (+) | False | XLOC_033661 |
| TCONS_00065854 | mRNA | downstream | 12340 | 22809937 ~ 22816141 (+) | False | XLOC_033661 |
| TCONS_00065855 | mRNA | downstream | 12341 | 22809938 ~ 22820816 (+) | False | XLOC_033661 |
| TCONS_00065803 | other | upstream | 1043515 | 21632100 ~ 21752761 (+) | False | XLOC_033634 |
| TCONS_00065804 | other | upstream | 1043515 | 21721128 ~ 21752761 (+) | False | XLOC_033634 |
| TCONS_00065791 | other | upstream | 2144545 | 20645181 ~ 20651731 (+) | False | XLOC_033625 |
| TCONS_00065774 | other | upstream | 2324913 | 20467549 ~ 20471363 (+) | False | XLOC_033616 |
| TCONS_00065712 | other | upstream | 3769206 | 19026314 ~ 19027070 (+) | True | XLOC_033584 |
| TCONS_00065856 | other | downstream | 12351 | 22809948 ~ 22820816 (+) | False | XLOC_033661 |
| TCONS_00065868 | other | downstream | 487438 | 23285035 ~ 23285151 (+) | True | XLOC_033666 |
| TCONS_00065870 | other | downstream | 564565 | 23362162 ~ 23362245 (+) | True | XLOC_033668 |
| TCONS_00065890 | other | downstream | 1236304 | 24033901 ~ 24040056 (+) | True | XLOC_033679 |
| TCONS_00065893 | other | downstream | 1274784 | 24072381 ~ 24072484 (+) | True | XLOC_033682 |
