RNA id: TCONS_00065803


Basic Information

Item Value
RNA id TCONS_00065803
length 706
RNA type processed_transcript
GC content 0.50
exon number 5
gene id XLOC_033634
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 21632100 ~ 21778474 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAGCgacggagagagagaggggagtgCCTGCGTTTGCAGCGGATTAAAAACTGCGCAATTTCCAGACGCGCATCTCCTGCTCACATCAAACTCGCGACTGGACGCCAGAGCTCCACTGAAAAGCCTCAGATGCGTGCTCGCGTTTTTAGAGAAGACTCTGGAACAATTTGGATGTTTGTGTCACATCATCTCCTCTCACTGTGGTTTCATAACGCAGCTGCGCCGACATTTTACAGCGTGCGATTCAAATGTATGACAGGATGAAGGTGCTGGAGAAACGCGCTCTGCGGCCGCCGTTCATTCACCAGAAGAAGAAGAACTACGCAGTTGCTTATGTAGCCTGCATTTTTACGATGAGGACATGCGAGAAGAAGAAGCCACCTCCCAGCTTGACCCTCCGTGCGTTAGCAGGTGAGAAAGGTCACGAGACACTTCATGTGGACCAATGGAGCGACTGGATTCTATATCTGCAGCCGATGTGGACGGAGAGCACAGAGATTTACCTTCTGCTCCGGAAAGAAAGAGGACGAGATGGCAGAGAGAGATGTGGAGAATGCGACAGGAAGTGGAAGAGTAGAGAAAGAAAAGGTCCACAGATTTCCACGGATTTGGAATGACGAGGGTGATTTGGAATCATGAAGATTCGGTCTAACTTTTGGGAGCGCTAGAGGAGACGCAAGCTGAACGAGTTTTACTACTATCG

Function

GO:

id name namespace
GO:0061384 heart trabecula morphogenesis biological_process
GO:0071557 histone H3-K27 demethylation biological_process
GO:0007507 heart development biological_process
GO:0005634 nucleus cellular_component
GO:0071558 histone demethylase activity (H3-K27 specific) molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091005-1 Predicted to enable histone demethylase activity (H3-K27 specific) and metal ion binding activity. Acts upstream of or within heart development and heart trabecula morphogenesis. Predicted to be located in nucleus. Is expressed in brain; heart; and otic vesicle. Orthologous to human KDM6B (lysine demethylase 6B).

Ensembl:

ensembl_id ENSDART00000173557

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068814 lncRNA upstream 451288 21096187 ~ 21180812 (+) False XLOC_033632
TCONS_00068812 lncRNA upstream 470791 21096126 ~ 21161309 (+) False XLOC_033632
TCONS_00068813 lncRNA upstream 470791 21096187 ~ 21161309 (+) False XLOC_033632
TCONS_00068570 lncRNA upstream 716188 20911912 ~ 20915912 (+) True XLOC_033629
TCONS_00068569 lncRNA upstream 755338 20869043 ~ 20876762 (+) False XLOC_033628
TCONS_00068815 lncRNA downstream 67540 21820301 ~ 21831281 (+) True XLOC_033636
TCONS_00068816 lncRNA downstream 106457 21859218 ~ 21874346 (+) False XLOC_033638
TCONS_00065809 lncRNA downstream 106546 21859307 ~ 21874346 (+) True XLOC_033638
TCONS_00068817 lncRNA downstream 685686 22438447 ~ 22537335 (+) False XLOC_033645
TCONS_00068818 lncRNA downstream 775418 22528179 ~ 22537335 (+) True XLOC_033645
TCONS_00065801 mRNA upstream 5520 21321317 ~ 21626580 (+) False XLOC_033633
TCONS_00065802 mRNA upstream 5731 21331688 ~ 21626369 (+) True XLOC_033633
TCONS_00065798 mRNA upstream 318416 21180747 ~ 21313684 (+) False XLOC_033632
TCONS_00065799 mRNA upstream 318416 21272833 ~ 21313684 (+) False XLOC_033632
TCONS_00065800 mRNA upstream 322252 21275152 ~ 21309848 (+) True XLOC_033632
TCONS_00065806 mRNA downstream 15691 21768452 ~ 21774220 (+) True XLOC_033634
TCONS_00065807 mRNA downstream 34746 21787507 ~ 21806454 (+) True XLOC_033635
TCONS_00065808 mRNA downstream 88276 21841037 ~ 21848205 (+) True XLOC_033637
TCONS_00065810 mRNA downstream 134546 21887307 ~ 21888521 (+) False XLOC_033639
TCONS_00065811 mRNA downstream 135026 21887787 ~ 21888261 (+) True XLOC_033639
TCONS_00065791 other upstream 980369 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065774 other upstream 1160737 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065712 other upstream 2605030 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065710 other upstream 2616589 19014767 ~ 19015511 (+) True XLOC_033581
TCONS_00065709 other upstream 2623521 19007840 ~ 19008579 (+) True XLOC_033580
TCONS_00065845 other downstream 1043322 22796083 ~ 22800865 (+) False XLOC_033659
TCONS_00065856 other downstream 1057187 22809948 ~ 22820816 (+) False XLOC_033661
TCONS_00065868 other downstream 1532274 23285035 ~ 23285151 (+) True XLOC_033666
TCONS_00065870 other downstream 1609401 23362162 ~ 23362245 (+) True XLOC_033668
TCONS_00065890 other downstream 2281140 24033901 ~ 24040056 (+) True XLOC_033679

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01066889_00000531_00006115.mRNA True 1382 mRNA 0.38 6 CI01066889 531 ~ 6723 (+)
tiger barb (Puntius tetrazona) TU78452 True 929 lncRNA 0.54 3 NC_056705.1 14201669 ~ 14214708 (+)