RNA id: TCONS_00065856


Basic Information

Item Value
RNA id TCONS_00065856
length 2718
RNA type nonsense_mediated_decay
GC content 0.50
exon number 11
gene id XLOC_033661
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 22809905 ~ 22820816 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGGTCGGAGACACGCGTTCGTATCAATTGATTTATCAACAAAAGAAACGGATACATTCTGTGCGGATATCGAACCACGAAGAAGCCCCTGACGCCCAGAAATGGCAACGGGAGCTAACGCAACCCCGCTTGGTAAGCTGCACCCGAGCATCGGCGCTAAGCGAGGCTTTGACTCTGGCCCCGGTCCGGGGTTAATGCCTCCGCCTGGGCCTTCGGTGCCTTTCCCGCTGCAGAACTTCCAACCGCCACAATTATCAAACCCTGGGTTCCCGCAGTTTCCCGGAGCCGTGAGCTCTGCGCTCTCAAACCCTATCGTAGTAGGACAGCAGTCTCAAGCGGGAGGCGGAGATTTTGGACAGAAGAAACGGAAAAGAAGTCGCTGGAGCAGCGAGACCCCTGATCAGAAGACTGTTATCCCGGGCATGCCCACCGTGATCCCTCCTGGGCTGACTCGGGACCAAGAACGAGCTTATATAGGTCTCCATCTCCTGAGCCCATTTACAACAGCGAGGGAAAGCGGCTTAACACACGTGAATATCGCACGCGCAAGAAACTGGAAGAAGAGAGACATTCTCTCATTACAGAGATGGTGGGACTGAACCCTGAATTCAAACCTCCAGCTGACTACAAACCACCGGCAACACGGGTCAGTGATAAGGTGATGATTCCTCAGGATGAATATCCAGAGATCAACTTTGTTGGGCTTTTAATTGGGCCACGtggaAACACTCTGAAAAACATTGAGAAGGAGTGCTGTGCTAAGATCATGATTCGTGGTAAAGGCTCAGTAAAGGAAGGAAAGGTGGGTCGTAAAGATGGACAGATGCTTCCAGGAGAAGATGAACCTCTTCATGCTCTGGTCACTGCTAACACTATGGAGAATGTGAAGAAAGCTGTAGAGCAGATTCGTAATATCCTCAAGCAGGGCATTGAGACCCCCGAGGACCAGAATGATCTGAGAAAAATGCAGTTGAGAGAGCTGGCACGGCTAAACGGCACTCTGAGAGAGGATGATAACAGgATCTTGCGGCCGTGGCAGAGCACAGAGCCTCGCAgcatcacaaacacaacactCTGTACAAAGTGTGGTGGAGCAGGTCACATCTCTTCAGACTGCAAGTTTACCAGTTCCTTTGCTCCACGGCCAGGTGAACCACCCCAGTCTGCCCAGGATAAAGCTCGTATGGATAAAGAGTACTTGTCTCTTATGGCAGAATTAGGAGAGGCTCCAGTCCCTTCTTCTGGTGGAGGCCATAACAATGCTCCGCCTAGTGGACCTCGTCCTTCAGGACCCAACAACAACCAGCCACCACCAAATCGCCCTCCTTGGATGAACTCCGGCCCTACTGATAATAGGAACTTCCACGGCATGCACCAGGGTCCTGGTGGCCCTCATAACTTCCCTCCACCAATGCCAAACATGGGTGGCCCTCCTATGCCACCAAATCCCAATGGAATGCCTCCGCCCTGGATGCAGCCACCCCCTCCTCCAATGGGCCAGGGCCCAGCACCACCTGGACACCCCATGGGCTTATTGCCACCACCCATGGGTATGATGCCCCCGCCACCACCACCTCCTAACAACCAACCACCTCCTCCGCCCTCAGGACCTCTTCCGCCATGGCAACAGCAGGCTCCTCCCCCTCCACCCACCAGCAGCATGGCAACCAGTGCTCCAATGCCATGGCAACAAAACACGACCACCACTTCCACCCCTGCCACTGGAAACCTGCCCCCCTGGCAACAGCCTCAGCAGACGGCCGCATCAGCATCTCAGCCTCCTCCACCCATGGGCAACCCATCCATGGTGCCACCTCCACCTGGTGTCCAACCTCCGCTTCCTCCTGGTGCCCCGCCTCCTCCACCGCCCCCTCCACCTGGCTCAGCTGGCATGATGTATGCACCACCGCCTCCACCTCCACCCATGGACCCTAACTTTGTGACCATGATGGGCATTCCTGGTATGCCACCCTACGGGATGCCACCTGCACCTCCACCACCTCCGCCTCAGAGTTAAAGGCTTGCTTTAGTCTCTGTGGCCCTGTGAAGGTGCAGTAAAGATATACACTCATACATCACAGGACTGTACCTGGTTCTGTTCATTTAACAGCTTGATGTGATTAGTTgctaaagatttatttttctttcgaATGGCTTCAGTTCAGACCTGTTTCCCATGCTtggacaaaataaatcaaattagcGAGAGTGTAAGTGAGACAATGTGGTTCATTTTGTAAATTTGCTTCAATTGTTCATGATTTTTAACTGTAGTATTTGATCTCTTCGTAGGATGTTTGTTCAAAAGAAGTTGATGTGCAgggaatgtttgtttttgtttgttttgtttttgccagCTTGCTTTtctccatgtttttttttaaagtctccaGCGAGTGAAAATGACATCTGCTAAAGTTTCAGCTAGCAACATTCCGACAGGTGTATAAACCACCGTTTACACTCTTAACCAACTGTGCATTTGTTGCTGCATAGTGTAAAAGGGCATCAATGATGTCTTCGAGATGTTGTAGATGATTGGCTTTCTCTATTTAGGTggtctgtattttattttattttttgtgttcaacttgTTCCCCCACCCCtttcaaaattgtttttatttaaaagaacttTCATTAATTGCCTTCCACCAAATGtatttcaatatttttgtaaTGAAGCATTCAACTAAATAAAAGTTGGCATGGTGTTGA

Function

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0045131 pre-mRNA branch point binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04927 Cortisol synthesis and secretion
ko04934 Cushing syndrome
ko03000 Transcription factors
ko03041 Spliceosome
ko03310 Nuclear receptors

ZFIN:

id description
ZDB-GENE-030131-2492 Predicted to enable mRNA binding activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus. Orthologous to human SF1 (splicing factor 1).

Ensembl:

ensembl_id ENSDART00000020212

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065852 lncRNA upstream 6294 22801495 ~ 22803654 (+) True XLOC_033660
TCONS_00065847 lncRNA upstream 12351 22796276 ~ 22797597 (+) False XLOC_033659
TCONS_00065834 lncRNA upstream 103006 22702224 ~ 22706942 (+) False XLOC_033655
TCONS_00065830 lncRNA upstream 132821 22675830 ~ 22677127 (+) True XLOC_033652
TCONS_00065828 lncRNA upstream 149699 22657687 ~ 22660249 (+) True XLOC_033651
TCONS_00065866 lncRNA downstream 166104 22986920 ~ 22991359 (+) True XLOC_033664
TCONS_00065867 lncRNA downstream 193130 23013946 ~ 23153185 (+) True XLOC_033665
TCONS_00068571 lncRNA downstream 742932 23563748 ~ 23564568 (+) True XLOC_033670
TCONS_00068820 lncRNA downstream 927663 23748479 ~ 23757190 (+) False XLOC_033672
TCONS_00068821 lncRNA downstream 932014 23752830 ~ 23757190 (+) True XLOC_033672
TCONS_00065850 mRNA upstream 3145 22801465 ~ 22806803 (+) False XLOC_033660
TCONS_00065851 mRNA upstream 3145 22801468 ~ 22806803 (+) False XLOC_033660
TCONS_00065846 mRNA upstream 8700 22796117 ~ 22801248 (+) False XLOC_033659
TCONS_00065849 mRNA upstream 9181 22796729 ~ 22800767 (+) True XLOC_033659
TCONS_00065848 mRNA upstream 9182 22796723 ~ 22800766 (+) False XLOC_033659
TCONS_00065858 mRNA downstream 3073 22823889 ~ 22852174 (+) False XLOC_033662
TCONS_00065859 mRNA downstream 3082 22823898 ~ 22852174 (+) False XLOC_033662
TCONS_00065860 mRNA downstream 3158 22823974 ~ 22851746 (+) False XLOC_033662
TCONS_00065861 mRNA downstream 28841 22849657 ~ 22852189 (+) True XLOC_033662
TCONS_00065862 mRNA downstream 32972 22853788 ~ 22900344 (+) True XLOC_033663
TCONS_00065845 other upstream 9083 22796083 ~ 22800865 (+) False XLOC_033659
TCONS_00065803 other upstream 1057187 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other upstream 1057187 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065791 other upstream 2158217 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065774 other upstream 2338585 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065868 other downstream 464219 23285035 ~ 23285151 (+) True XLOC_033666
TCONS_00065870 other downstream 541346 23362162 ~ 23362245 (+) True XLOC_033668
TCONS_00065890 other downstream 1213085 24033901 ~ 24040056 (+) True XLOC_033679
TCONS_00065893 other downstream 1251565 24072381 ~ 24072484 (+) True XLOC_033682
TCONS_00065894 other downstream 1254045 24074861 ~ 24074975 (+) True XLOC_033683

Expression Profile

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