Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00065866 |
| length | 767 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 4 |
| gene id | XLOC_033664 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 22981441 ~ 23006732 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010389 | regulation of G2/M transition of mitotic cell cycle | biological_process |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | biological_process |
| GO:0044772 | mitotic cell cycle phase transition | biological_process |
| GO:0000307 | cyclin-dependent protein kinase holoenzyme complex | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity | molecular_function |
| GO:0019901 | protein kinase binding | molecular_function |
| id | description |
|---|---|
| ko04068 | FoxO signaling pathway |
| ko04110 | Cell cycle |
| ko04218 | Cellular senescence |
| ko04914 | Progesterone-mediated oocyte maturation |
| ko05170 | Human immunodeficiency virus 1 infection |
| ko03032 | DNA replication proteins |
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-060929-684 | Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of G2/M transition of mitotic cell cycle. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in spermatocyte; spermatogonium; and testis. Orthologous to human CCNB3 (cyclin B3). |
| ensembl_id | ENSDART00000041619 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00065857 | lncRNA | upstream | 167923 | 22817272 ~ 22818997 (+) | True | XLOC_033661 |
| TCONS_00065852 | lncRNA | upstream | 183266 | 22801495 ~ 22803654 (+) | True | XLOC_033660 |
| TCONS_00065847 | lncRNA | upstream | 189323 | 22796276 ~ 22797597 (+) | False | XLOC_033659 |
| TCONS_00065834 | lncRNA | upstream | 279978 | 22702224 ~ 22706942 (+) | False | XLOC_033655 |
| TCONS_00065830 | lncRNA | upstream | 309793 | 22675830 ~ 22677127 (+) | True | XLOC_033652 |
| TCONS_00065867 | lncRNA | downstream | 22587 | 23013946 ~ 23153185 (+) | True | XLOC_033665 |
| TCONS_00068571 | lncRNA | downstream | 572389 | 23563748 ~ 23564568 (+) | True | XLOC_033670 |
| TCONS_00068820 | lncRNA | downstream | 757120 | 23748479 ~ 23757190 (+) | False | XLOC_033672 |
| TCONS_00068821 | lncRNA | downstream | 761471 | 23752830 ~ 23757190 (+) | True | XLOC_033672 |
| TCONS_00065885 | lncRNA | downstream | 954702 | 23946061 ~ 23949757 (+) | True | XLOC_033675 |
| TCONS_00065862 | mRNA | upstream | 86576 | 22853788 ~ 22900344 (+) | True | XLOC_033663 |
| TCONS_00065861 | mRNA | upstream | 134731 | 22849657 ~ 22852189 (+) | True | XLOC_033662 |
| TCONS_00065858 | mRNA | upstream | 134746 | 22823889 ~ 22852174 (+) | False | XLOC_033662 |
| TCONS_00065859 | mRNA | upstream | 134746 | 22823898 ~ 22852174 (+) | False | XLOC_033662 |
| TCONS_00065860 | mRNA | upstream | 135174 | 22823974 ~ 22851746 (+) | False | XLOC_033662 |
| TCONS_00065869 | mRNA | downstream | 300774 | 23292133 ~ 23494310 (+) | False | XLOC_033667 |
| TCONS_00065871 | mRNA | downstream | 466444 | 23457803 ~ 23494298 (+) | True | XLOC_033667 |
| TCONS_00065872 | mRNA | downstream | 504627 | 23495986 ~ 23540482 (+) | False | XLOC_033669 |
| TCONS_00065873 | mRNA | downstream | 504644 | 23496003 ~ 23530517 (+) | False | XLOC_033669 |
| TCONS_00065874 | mRNA | downstream | 504644 | 23496003 ~ 23533682 (+) | False | XLOC_033669 |
| TCONS_00065856 | other | upstream | 166104 | 22809948 ~ 22820816 (+) | False | XLOC_033661 |
| TCONS_00065845 | other | upstream | 186055 | 22796083 ~ 22800865 (+) | False | XLOC_033659 |
| TCONS_00065803 | other | upstream | 1234159 | 21632100 ~ 21752761 (+) | False | XLOC_033634 |
| TCONS_00065804 | other | upstream | 1234159 | 21721128 ~ 21752761 (+) | False | XLOC_033634 |
| TCONS_00065791 | other | upstream | 2335189 | 20645181 ~ 20651731 (+) | False | XLOC_033625 |
| TCONS_00065868 | other | downstream | 293676 | 23285035 ~ 23285151 (+) | True | XLOC_033666 |
| TCONS_00065870 | other | downstream | 370803 | 23362162 ~ 23362245 (+) | True | XLOC_033668 |
| TCONS_00065890 | other | downstream | 1042542 | 24033901 ~ 24040056 (+) | True | XLOC_033679 |
| TCONS_00065893 | other | downstream | 1081022 | 24072381 ~ 24072484 (+) | True | XLOC_033682 |
| TCONS_00065894 | other | downstream | 1083502 | 24074861 ~ 24074975 (+) | True | XLOC_033683 |
