Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00065852 |
| length | 580 |
| lncRNA type | retained_intron |
| GC content | 0.44 |
| exon number | 2 |
| gene id | XLOC_033660 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 22801465 ~ 22806803 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | biological_process |
| GO:0045292 | mRNA cis splicing, via spliceosome | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-3902 | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Orthologous to human RBM4 (RNA binding motif protein 4) and RBM4B (RNA binding motif protein 4B). |
| ensembl_id | ENSDART00000148054 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00065847 | lncRNA | upstream | 3898 | 22796276 ~ 22797597 (+) | False | XLOC_033659 |
| TCONS_00065834 | lncRNA | upstream | 94553 | 22702224 ~ 22706942 (+) | False | XLOC_033655 |
| TCONS_00065830 | lncRNA | upstream | 124368 | 22675830 ~ 22677127 (+) | True | XLOC_033652 |
| TCONS_00065828 | lncRNA | upstream | 141246 | 22657687 ~ 22660249 (+) | True | XLOC_033651 |
| TCONS_00065826 | lncRNA | upstream | 162121 | 22637209 ~ 22639374 (+) | False | XLOC_033650 |
| TCONS_00065857 | lncRNA | downstream | 13618 | 22817272 ~ 22818997 (+) | True | XLOC_033661 |
| TCONS_00065866 | lncRNA | downstream | 183266 | 22986920 ~ 22991359 (+) | True | XLOC_033664 |
| TCONS_00065867 | lncRNA | downstream | 210292 | 23013946 ~ 23153185 (+) | True | XLOC_033665 |
| TCONS_00068571 | lncRNA | downstream | 760094 | 23563748 ~ 23564568 (+) | True | XLOC_033670 |
| TCONS_00068820 | lncRNA | downstream | 944825 | 23748479 ~ 23757190 (+) | False | XLOC_033672 |
| TCONS_00065846 | mRNA | upstream | 247 | 22796117 ~ 22801248 (+) | False | XLOC_033659 |
| TCONS_00065849 | mRNA | upstream | 728 | 22796729 ~ 22800767 (+) | True | XLOC_033659 |
| TCONS_00065848 | mRNA | upstream | 729 | 22796723 ~ 22800766 (+) | False | XLOC_033659 |
| TCONS_00065842 | mRNA | upstream | 5858 | 22792132 ~ 22795637 (+) | False | XLOC_033658 |
| TCONS_00065844 | mRNA | upstream | 6396 | 22792895 ~ 22795099 (+) | True | XLOC_033658 |
| TCONS_00065853 | mRNA | downstream | 6251 | 22809905 ~ 22820816 (+) | False | XLOC_033661 |
| TCONS_00065854 | mRNA | downstream | 6283 | 22809937 ~ 22816141 (+) | False | XLOC_033661 |
| TCONS_00065855 | mRNA | downstream | 6284 | 22809938 ~ 22820816 (+) | False | XLOC_033661 |
| TCONS_00065858 | mRNA | downstream | 20235 | 22823889 ~ 22852174 (+) | False | XLOC_033662 |
| TCONS_00065859 | mRNA | downstream | 20244 | 22823898 ~ 22852174 (+) | False | XLOC_033662 |
| TCONS_00065845 | other | upstream | 630 | 22796083 ~ 22800865 (+) | False | XLOC_033659 |
| TCONS_00065803 | other | upstream | 1048734 | 21632100 ~ 21752761 (+) | False | XLOC_033634 |
| TCONS_00065804 | other | upstream | 1048734 | 21721128 ~ 21752761 (+) | False | XLOC_033634 |
| TCONS_00065791 | other | upstream | 2149764 | 20645181 ~ 20651731 (+) | False | XLOC_033625 |
| TCONS_00065774 | other | upstream | 2330132 | 20467549 ~ 20471363 (+) | False | XLOC_033616 |
| TCONS_00065856 | other | downstream | 6294 | 22809948 ~ 22820816 (+) | False | XLOC_033661 |
| TCONS_00065868 | other | downstream | 481381 | 23285035 ~ 23285151 (+) | True | XLOC_033666 |
| TCONS_00065870 | other | downstream | 558508 | 23362162 ~ 23362245 (+) | True | XLOC_033668 |
| TCONS_00065890 | other | downstream | 1230247 | 24033901 ~ 24040056 (+) | True | XLOC_033679 |
| TCONS_00065893 | other | downstream | 1268727 | 24072381 ~ 24072484 (+) | True | XLOC_033682 |
