RNA id: TCONS_00065846


Basic Information

Item Value
RNA id TCONS_00065846
length 2575
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_033659
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 22796083 ~ 22801248 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGGTAATGAAGACTGGACACATATTTTgtcttatttgaaatattttaagcaCCGTCTTCGCAAGCTATTCAGACATTTGATAGCTTTGCGTTTTTCCTGTTTGCTTGTGGACCGGAAGTGCTGTTGGTGACGGCGGGCGACTCCATTTTAGGCTTCATTCATCTTCGCAGGGCGGTGAGATTACGTGCTCGCAACGGATTAAACGGCAACAAAGATGGTTAAGATCTTTATTGGCAACCTATCCCCGACCTCGACCGCGGACGATCTGCGCTCTCTTTTTTCGGAATTCGGCATAGTAAAAGAGTGCGACGTGCTGAAAAATTATGGCTTCGTGCACATGGATAGTAAGAAGGAGGCCGAAGCGGCTATCCGAAAGCTGCACCATTACGAGCTGAAGGGTCAAGCCATAAATGTGGAGCTGAGCAAAGGAAAACCAAGGGGCTCCACCAAGCTCCATGTGAGCAACATCAGCAGTGGCTGCACCAACCAGGAGCTTCGGGCTAAGTTTGAAGAGTACGGACCCGTGGTTGAGTGTGATATTGTGAAGGACTATGCATTTGTTCACATGGAGAGAATGGATGATGCCATGGAGGCCATCAGTGGGCTGGAGAACACCACATTCCAAGGCAAGCTGATCAAAGTACAACTGTCCACGAGTCGTCTTCGTACAGCGCCCGGCATGGGAGACCAAACCGGCTGTTACATCTGCGGAGAACAGGGCCATTGGTCCAAAGATTGCAGGCATAGCCAGAATGGTAGCTATGGCGGAGGCATGGGGGGATACCCCAGTAGAGGCCCTCCAAGAGGCGGCCCGAGTTACGGCATGGGTGGCCCTGGGGGTCATCCTAGTAGAGGTTACCCAGCAGGGCCACTTCCCCCTCCCCCACCCATGAGTCGGCGTCCCAGCTATGGCGAGTATGGAGCAGAGCCTCGAGAACGGTACCTAACCAGGGTGCCGACCGGCTATCCTGAGCGGCCTCCTGTGTATGAACGAGATCGCTTCGGGAGCATTGACTATTACGAGAAGTTTCGGGCTCATCCAGCTGCCTCTAGCTACTATGAGGATAGGCCTCACGCCATCCcccctcctccacctcctccccCCCTCTCTTCTTCCTCCCTCTCAAGGATGCGATTGGCTCCTCCCAGCCTTGATCCCTATGAGCGACGCTCTCTGGCGCCTCCACCTCCCACAGCAGCAGCAGCGAGCTTCGCGCGGGACCGTAGTCCAATCAGACGTGTGGGCGCCGGTGCGGAAGGCTACTCGTACGAGCGCTCGCGACTTTCCCCGGTCTCAAGGAGCTCATCGGCTTACAGCCTGCCGCGGGCCAGGGAGGGATACACCGAGCGAGTTCGATACGCATACTAAGCCACACACATGCTAAGgtATTGTCAAGTGATGAGACTTCTGCTCCACCGATATGACTTTGGCTTGATCAGATGCTTTATTGGATTTCAAAGATTCAGGATTGGATAGGCACATTCAACACAATGCTTATTAGCCCGCCATGTTAATGTATTACCCATGATACACAAActgttgtttaattaaaaaatggaGACATTGATTCATGATTGCAAAGAAAGTTTTGGTTTCTGCTTAGCTTTTCACTTTTATCAGGAGGTAAGGTGGGGTTTTTCATGTCAGCATAATATTTTAACTGCTATTAATTGCGATTTAAAGATGCatatttagtttctttttaaCGAATTgggttttttttctgcttttcccTGTCATGTTGTGATCACTTATTTAGTTTTTGTGCtccaatttttttccttttagctGTTGGGTTGACTTGCCaccttatttttttagtttttttttttgagtttttgtgAGGACAATCTGGTTATTTTTCTTTTGGCAATAATAATGCCAGCATTGTGTATATGCGGGGGGTGTGGCAATCTGTAATCCTGCAGCTGCAACAGACTTAATgggaaaataaactcaaattcGACATTCCACtttctttttattcttattttctaCAGATGATTGGTATGTACAAACTGTTTTTACATCTTGCTCGTTGAAATGTCTTGTATCTAATGCGTTAAACTGGACATACAACTTGTTACTTTACCAATGTCTGTGAGTGTTTTTTGGGAGCTTGTTTAATTGAATATACTAAGGTTGTTTGATCGTTTCTCCCTTCTCAACtgacttaaaaaagaaaataaaaaagatctGATTTAATACAACCCAAGTAGTTGGGCAGCTTTCAGGTGGATGCAAACTGTATTGTGTTCTGTTCACACAAATGACTGTTTATGACAGGAGATGTTTAGATTGTAAAAAGCACCACGTAGATGAAAAGGTTGGCTTCACATGGAAGCGAATTGAAAATCTGAATGCGATGTGCTGACCAACTCTCACTCAGGGCTTTGTCCACCTTCGAGACTGCTGGCGTTCACTGGCGTTTCTTCTTTAATGGGTGCCTTGGGGAAGTTCtgtgaaaatgtttataaatttggTTTTCTGTAGTTTGTATATTTCCTACAGAAGTCAGGAGTGTGTTTTATGAATTATCTTTTGTAATAAACCGGTATTTTGGTGACAATAA

Function

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3019 Enables mRNA 3'-UTR binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Orthologous to several human genes including RBM4 (RNA binding motif protein 4).

Ensembl:

ensembl_id ENSDART00000112169

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065834 lncRNA upstream 89175 22702224 ~ 22706942 (+) False XLOC_033655
TCONS_00065830 lncRNA upstream 118990 22675830 ~ 22677127 (+) True XLOC_033652
TCONS_00065828 lncRNA upstream 135868 22657687 ~ 22660249 (+) True XLOC_033651
TCONS_00065826 lncRNA upstream 156743 22637209 ~ 22639374 (+) False XLOC_033650
TCONS_00065852 lncRNA downstream 247 22801495 ~ 22803654 (+) True XLOC_033660
TCONS_00065857 lncRNA downstream 16024 22817272 ~ 22818997 (+) True XLOC_033661
TCONS_00065866 lncRNA downstream 185672 22986920 ~ 22991359 (+) True XLOC_033664
TCONS_00065867 lncRNA downstream 212698 23013946 ~ 23153185 (+) True XLOC_033665
TCONS_00068571 lncRNA downstream 762500 23563748 ~ 23564568 (+) True XLOC_033670
TCONS_00065842 mRNA upstream 480 22792132 ~ 22795637 (+) False XLOC_033658
TCONS_00065844 mRNA upstream 1018 22792895 ~ 22795099 (+) True XLOC_033658
TCONS_00065843 mRNA upstream 3176 22792192 ~ 22792941 (+) False XLOC_033658
TCONS_00065841 mRNA upstream 22985 22767678 ~ 22773132 (+) True XLOC_033657
TCONS_00065838 mRNA upstream 35027 22718251 ~ 22761090 (+) False XLOC_033656
TCONS_00065850 mRNA downstream 217 22801465 ~ 22806803 (+) False XLOC_033660
TCONS_00065851 mRNA downstream 220 22801468 ~ 22806803 (+) False XLOC_033660
TCONS_00065853 mRNA downstream 8657 22809905 ~ 22820816 (+) False XLOC_033661
TCONS_00065854 mRNA downstream 8689 22809937 ~ 22816141 (+) False XLOC_033661
TCONS_00065855 mRNA downstream 8690 22809938 ~ 22820816 (+) False XLOC_033661
TCONS_00065803 other upstream 1043356 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other upstream 1043356 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065791 other upstream 2144386 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065774 other upstream 2324754 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065712 other upstream 3769047 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065856 other downstream 8700 22809948 ~ 22820816 (+) False XLOC_033661
TCONS_00065868 other downstream 483787 23285035 ~ 23285151 (+) True XLOC_033666
TCONS_00065870 other downstream 560914 23362162 ~ 23362245 (+) True XLOC_033668
TCONS_00065890 other downstream 1232653 24033901 ~ 24040056 (+) True XLOC_033679
TCONS_00065893 other downstream 1271133 24072381 ~ 24072484 (+) True XLOC_033682

Expression Profile

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