Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00065791 |
| length | 1028 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.39 |
| exon number | 5 |
| gene id | XLOC_033625 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 20645121 ~ 20651736 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0032918 | spermidine acetylation | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0019809 | spermidine binding | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0008080 | N-acetyltransferase activity | molecular_function |
| GO:0004145 | diamine N-acetyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041212-21 | Predicted to enable diamine N-acetyltransferase activity and spermidine binding activity. Predicted to be involved in spermidine acetylation. Is expressed in liver. Orthologous to human SAT2 (spermidine/spermine N1-acetyltransferase family member 2). |
| ensembl_id | ENSDART00000173621 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00068807 | lncRNA | upstream | 2268 | 20382065 ~ 20642913 (+) | True | XLOC_033613 |
| TCONS_00065786 | lncRNA | upstream | 67574 | 20571991 ~ 20577607 (+) | True | XLOC_033622 |
| TCONS_00068811 | lncRNA | upstream | 103027 | 20536652 ~ 20542154 (+) | True | XLOC_033621 |
| TCONS_00065783 | lncRNA | upstream | 120497 | 20524127 ~ 20524684 (+) | True | XLOC_033620 |
| TCONS_00068567 | lncRNA | upstream | 127350 | 20516008 ~ 20517831 (+) | True | XLOC_033618 |
| TCONS_00068568 | lncRNA | downstream | 145271 | 20797002 ~ 20831570 (+) | True | XLOC_033627 |
| TCONS_00068569 | lncRNA | downstream | 217312 | 20869043 ~ 20876762 (+) | False | XLOC_033628 |
| TCONS_00068570 | lncRNA | downstream | 260181 | 20911912 ~ 20915912 (+) | True | XLOC_033629 |
| TCONS_00068812 | lncRNA | downstream | 444395 | 21096126 ~ 21161309 (+) | False | XLOC_033632 |
| TCONS_00068813 | lncRNA | downstream | 444456 | 21096187 ~ 21161309 (+) | False | XLOC_033632 |
| TCONS_00065789 | mRNA | upstream | 8304 | 20629411 ~ 20636877 (+) | True | XLOC_033624 |
| TCONS_00065788 | mRNA | upstream | 44611 | 20587548 ~ 20600570 (+) | True | XLOC_033623 |
| TCONS_00065787 | mRNA | upstream | 48942 | 20587506 ~ 20596239 (+) | False | XLOC_033623 |
| TCONS_00065785 | mRNA | upstream | 67574 | 20563305 ~ 20577607 (+) | False | XLOC_033622 |
| TCONS_00065784 | mRNA | upstream | 102636 | 20535869 ~ 20542545 (+) | False | XLOC_033621 |
| TCONS_00065793 | mRNA | downstream | 5211 | 20656942 ~ 20665339 (+) | True | XLOC_033626 |
| TCONS_00065795 | mRNA | downstream | 224572 | 20876303 ~ 20908661 (+) | False | XLOC_033628 |
| TCONS_00065794 | mRNA | downstream | 224572 | 20876303 ~ 20908661 (+) | True | XLOC_033628 |
| TCONS_00065796 | mRNA | downstream | 266235 | 20917966 ~ 20939108 (+) | True | XLOC_033630 |
| TCONS_00065797 | mRNA | downstream | 314149 | 20965880 ~ 21089475 (+) | True | XLOC_033631 |
| TCONS_00065774 | other | upstream | 173818 | 20467549 ~ 20471363 (+) | False | XLOC_033616 |
| TCONS_00065712 | other | upstream | 1618111 | 19026314 ~ 19027070 (+) | True | XLOC_033584 |
| TCONS_00065710 | other | upstream | 1629670 | 19014767 ~ 19015511 (+) | True | XLOC_033581 |
| TCONS_00065709 | other | upstream | 1636602 | 19007840 ~ 19008579 (+) | True | XLOC_033580 |
| TCONS_00065656 | other | upstream | 3298042 | 17346399 ~ 17347139 (+) | True | XLOC_033546 |
| TCONS_00065803 | other | downstream | 980369 | 21632100 ~ 21752761 (+) | False | XLOC_033634 |
| TCONS_00065804 | other | downstream | 1069397 | 21721128 ~ 21752761 (+) | False | XLOC_033634 |
| TCONS_00065845 | other | downstream | 2144352 | 22796083 ~ 22800865 (+) | False | XLOC_033659 |
| TCONS_00065856 | other | downstream | 2158217 | 22809948 ~ 22820816 (+) | False | XLOC_033661 |
| TCONS_00065868 | other | downstream | 2633304 | 23285035 ~ 23285151 (+) | True | XLOC_033666 |
