RNA id: TCONS_00065789


Basic Information

Item Value
RNA id TCONS_00065789
length 3633
RNA type mRNA
GC content 0.35
exon number 6
gene id XLOC_033624
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20629411 ~ 20636877 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaataaatgacattatttttattcaaattagcatttgttcatgtttattttttttaaacttctttcaattttatttaatgacaatattaattacatttaattaattatttgctatTTTCTAATGCATTCTCTACACTAAATTTCCCCATAACATTCCCTCATGGGCCTCTGGGTCCCCCGACCTCAGATTGAAACTGGATGTCCAACAGTGGAGCCCAAACTGCAATATCAAATCCGAACGCACAGATGGCGCTGTTTCAGCGGTTTCATCTTTTCATGCCGCGTGGAGTCCGAGCAGCGTAAATACATCCCTTCCGTATTTCCATTCTAAATTATTCCACGTTGACAAACACTCAGTTTTTGTAGCACACTGTGTGTGTTGTTATTGTTAACCGCAAGATGGATTTCACAATCCGGGCCGCCACGCTTGAGGACTGTAAGGACATCTCTCGGATGATACTGGAATTGGCAGAGTTTGAAAAAGTTTCTGACCATGTCAAGATCACACAAAGAGATCTGGAGCAGGATGGATTTTCCAAAAACCCTTTTTTCCATGGAATTATTGCTGAAGTACCAGAACACTTAAAGTCCAGAGAGGGTCACACCAAAGTCGGTTACTCTCTGTACTTCTACATGTACAGCTCATGGAAAGGTCGAGCTGTGTACATGGAGGATCTGTATGTGATGCCAGAGTTCAGagGCAAGGGCATTGGCAAGGCTCTGATGGCCAAAGTTTCCCAGCTTGGTCTGGCTGCTGGTTGCACTCAGCTCAACTTCACTGTGCTGGACTGGAATAAGTCATCTCTGGACTTCTACCTGAAGCAGGGCTGCTGGGACGTGACCTCTGAACTGGGCTATCACTGCATGCGCTGTGAGGGTGAAGCTCTTCAACACTTGGCACAGGGAGAGCTTTAAATGATCAAACACAGATTTCATTCTCAACTCCAGCCAGTTACACATTACTTGAGAAGCACAGGAAGACAGTAAAATAAGCTGACAATTAAAATGGgcaaaatgaaagaaataaacaCGCTCATGACCTAGTTAGattttaaatacacattactgaaggggtagttcacccaaaatgaaaattgtatggtaatgttgatgtttttcttgatttttcctgtaaaactttatttaaaggtgacctattattcaaaaatcacatttattagAGGTTTAAACAGTTTTGTAGCAGTAGTGTGTGAaaataaccagcttctaatggtaaaaatgtattaagtttattttttatagtcacatttcatataaacagtctgcagaaacactttgattgacattctccctttataAGTGTCATCGCTGTGGAAAGCCTCGCCCGTTAGTGATGATCTCTCTTTTTAATTGGCATAGAAtgatagtcttgtttttgaatctgccactatgctgccACATAGACATTTGCAGCTCCACCCCCCACAGcacatctcatttgaatttaaagtgacagtcaccaaaatgacacaattaggatcaaagcctaaaaggggcagttccatagagttaataaataaaacattatttgtggcaCATTTTGAGCTCAAAGTTCACATTCACACTTAGAAACTTATTTTACATCGCGTAAAAAAGGCATAAAAGGTCCTCTTTAAAATTTTCTCCAACATATTACTTTGGCTGTACTTCTTTTTAGACTGTGATTTTGAGTTTTTTGTAATTAGTTCCAGTTATggctaatatatatgcacaaatatattattgtaaagcctCCTGTTGAACATATtagtttaaaagagagatttttgaGGGCTGTACCCCAAAGTTTTAGGCTGCGTATTCACTGAAGTGTTTTTGCGCTTCAGAAACAGAAGCGCTCAGCTATGGGTGTTTCTCCaactgttttaaaactttttttaaaatgctgagCACACACACTGCTAAGCATAATAGAGATGCTCAGCACCTGGATACACTGccagcattttaaaaacatggtaattccattaacaacaacaaaagaaaaacagctCAGCTCAGGAAAAACGCTTTGGTAGAGATGTACTCTTAAGAAGCAAAACAATCAGTCTGTGCTGGAAACATTGACTACATTtatatggacatcagtaattgaattgtttgccttaatctgaataagacaataatatgattaaggtgtttacatgagttgctctttgaatgtttcttttatgatcccattttacatgttatagcgcataatttgattaacgtcattgcgtcaccatgtgtttcattcttaatttgtcgactataactgcagtttggcactttcattcaagaacatttcatgcatgcccccgtgacaaatgagatattggatgagagtatgaactgctggaagtatgaataactgttttatttaaatgcaatttgATACCGCACACCGTAAGGCAAAAAAAACTCTTCATTTcatgtcaaacagccgtgtgtataGACTGTGCTGTTGCAAAAttcagtgaaaatcctacacgatggtaatagtttgattgcaatgtttacatgtctgtgctgcacttcaataatgcaactaaaatcggcatactctgCATGTCTtaatccaatttctgtttagttcgtttatgactttagttggatgaaattaatcaaaaattgctaattacatggtagactcttaatcaaagtattgtcttaatcacattaGAATCAttgatgttcatgtaaacatacCCAATGTATACAAATCGATTACCAATTGCATAAAATAGTTGTATTATatcattacactgcaaaaaatgcttttcctacttagatttgtcttgtttctagtacatATATCTCgaaattctgaaataaaaaaagcattttttagtTAATCAaagaatgttttcttttttaagaactaatatgtcaaaattaagtgagttgtTCCTTAaagcagcaaaataatcttgtttttattcAGACATAAGACTATTTAGCTTCttttagggaaaaactcacttcattttgacaatatttcttaaaacaagacaatagttTTAAGTTCATCATTTAAGTTGTTGTGGTGTAGCCTGTATGTTGCCTTTTGACTTTTAAAGTTAGCTTGCATATTTTAGAATACCAAAGACCTTGGTGTCAGCTAAAAACTTATCTTTTATGTTCTACTGAAGAGGTCCTGTACGTGTAcaaaattttcatatttgggtgaactatctttttgaGGCAAAATGAGCTGAGAACAACAACCAGCAGAAGCTTATTTATGTTGCATCAAACCATGCAAATGCATTAGAATTTTAAGTAATACCGATTTATTGTGCCCTTTAAAATTGTGATTCTGTCCTTACCAAAGATTCAGAGGGGCACTTTTGTTGGTCAAATTAGGACATCATTTTCTATCGGATTTACATGAGTGAAAAGAGTGGAGACAGTTACAGTTGATGTTGTTATCATTGTTTGTATTTACACTTGTTGGTTTTAGATGATATATTTAAGCTGCCATTTTATTGTATAGCCATATATTACATGTCATTTTGTTTACACATTTGAGAGCTTGTTTAACCATCTAGTCATCCTTGTTTACGAATCCAAAATCCTACTATAATGATGTTCCTTGACTATATAGTAAAATCTTGATCTTTAGACAAG

Function

GO: NA

KEGG:

id description
ko01504 Antimicrobial resistance genes

Ensembl:

ensembl_id ENSDART00000173710

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065786 lncRNA upstream 51804 20571991 ~ 20577607 (+) True XLOC_033622
TCONS_00068811 lncRNA upstream 87257 20536652 ~ 20542154 (+) True XLOC_033621
TCONS_00065783 lncRNA upstream 104727 20524127 ~ 20524684 (+) True XLOC_033620
TCONS_00068567 lncRNA upstream 111580 20516008 ~ 20517831 (+) True XLOC_033618
TCONS_00068810 lncRNA upstream 112145 20511761 ~ 20517266 (+) False XLOC_033618
TCONS_00065792 lncRNA downstream 12789 20649666 ~ 20650542 (+) True XLOC_033625
TCONS_00068568 lncRNA downstream 160125 20797002 ~ 20831570 (+) True XLOC_033627
TCONS_00068569 lncRNA downstream 232166 20869043 ~ 20876762 (+) False XLOC_033628
TCONS_00068570 lncRNA downstream 275035 20911912 ~ 20915912 (+) True XLOC_033629
TCONS_00068812 lncRNA downstream 459249 21096126 ~ 21161309 (+) False XLOC_033632
TCONS_00065788 mRNA upstream 28841 20587548 ~ 20600570 (+) True XLOC_033623
TCONS_00065787 mRNA upstream 33172 20587506 ~ 20596239 (+) False XLOC_033623
TCONS_00065785 mRNA upstream 51804 20563305 ~ 20577607 (+) False XLOC_033622
TCONS_00065784 mRNA upstream 86866 20535869 ~ 20542545 (+) False XLOC_033621
TCONS_00065782 mRNA upstream 98964 20524064 ~ 20530447 (+) False XLOC_033620
TCONS_00065790 mRNA downstream 8244 20645121 ~ 20651736 (+) False XLOC_033625
TCONS_00065793 mRNA downstream 20065 20656942 ~ 20665339 (+) True XLOC_033626
TCONS_00065795 mRNA downstream 239426 20876303 ~ 20908661 (+) False XLOC_033628
TCONS_00065794 mRNA downstream 239426 20876303 ~ 20908661 (+) True XLOC_033628
TCONS_00065796 mRNA downstream 281089 20917966 ~ 20939108 (+) True XLOC_033630
TCONS_00065774 other upstream 158048 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065712 other upstream 1602341 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065710 other upstream 1613900 19014767 ~ 19015511 (+) True XLOC_033581
TCONS_00065709 other upstream 1620832 19007840 ~ 19008579 (+) True XLOC_033580
TCONS_00065656 other upstream 3282272 17346399 ~ 17347139 (+) True XLOC_033546
TCONS_00065791 other downstream 8304 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065803 other downstream 995223 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other downstream 1084251 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065845 other downstream 2159206 22796083 ~ 22800865 (+) False XLOC_033659
TCONS_00065856 other downstream 2173071 22809948 ~ 22820816 (+) False XLOC_033661

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_01938798_01942296.mRNA True 1891 mRNA 0.37 5 CI01000344 1938798 ~ 1943734 (+)