RNA id: TCONS_00065785


Basic Information

Item Value
RNA id TCONS_00065785
length 3238
RNA type mRNA
GC content 0.47
exon number 12
gene id XLOC_033622
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20563305 ~ 20577607 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACCGACACTCTCACACCCGACAGGAAGCTCTCACTCATGTCGTATACACTTACACGAACACCCACGCTTTACCTGCCAGTTAGACAACTCTTACGTTCTTTACACTCAAGTCACTAACCACAACAGATGCAAATCTTAAGATAACACTCTGAAACGCCAGAACAATAAGCCCAAAAGGTCTCTCAGCCTTCCAACTTCACTGAAGACAGCACGCTTTCATCTTGCAGCTTTTGTTAATCgttttaaaaagtaaagaaaagttgGGTTGCGGTGGATTCAGGCGTCATTTTGGTGTTTGCTCTACCGTCCACCATGATTGAGATCCTCGTTGGACCAAGAAGAGATGATAGTCTATGGGAGACTGTGAGTATGCTTGTGATGTAGGAGAAGAGATAAAAATAGACTGAAAAGGAAAGAAGGGTAAGGAGGAGAGCAACACAGAAGAGGGAGGGAGatgcagaaagagagagatagagggaGATCCGTGACTATTTCCTCAGGATGTGGCTTTCGGTTCAGGGTTTTAAAGGGGGGGGGACTCTATTACCTTTTTGATCGGTGGCACCTGTGAAAcaagtgtgtgtgagaaagtgttTTCACGTTCAAGTATGATGCGTTTGCGCAGAAGTGAGAAAGAGGCAGAGCCTGCTTTCACATGTGGCTGTATTTTAATTTCGGTAGCTGGAGACACAGCTCACTAGTCGACATTAACAGATAGCACACGAACTAAAGCAACAGGTATGGACCGAGGGAGACAATCATGGTTCTCAGATGCTATGAGTGCCCTTTAACTTGAGGAAGCCGTTTGCAACACAACACATGGCTGACCATACATCTCCTGATCCAGAGTCGCTCTCCTTCGCTCCTATGTTTCGACCTCATGCTGAAGGTCAAAGGTCAAACCACAGCCTCTACCAACAAGGTTCAATTTCTGGGCTCAGTCCATTTGAGGTCCAGTGTGAAGAGCGCACTGGGAGCACTCTTAATGGAGTAGATCAATCAGGGAGCGCTGCTTATTGGGGGAATACATCACCAGTGCCCTCAATGGTACTCAACAGGAACAAGGCACAAGCTGGAGTATATGAGCCCGACTGGAACTCTCACTGCCACCAACAGGAGGCTGCGGAGAGGTATGAAACAACCGGGCATCAACAGCAAAAGCTGGATTCTTTCTCTGAGGCGTTTTGTAGTCGTAGCACTTCACGAATGCTAAGCGGAGGAGAGCAGATCGGCTTCAGCAATACTACTCCTCCATCGCATGCGCTCTCCTTCCCTCTGGTTCTCAGTCCACCTCCGACACCCCTGCCTCCTTCATCCTTCTCTCCTCCCAAACGACCTCAACACTTCTTGCCTGGTCAGATCTTGAGCCaatcacaaatacaaacacaggcAGATGGAGCGCTGCAGTTCTTTCCTTCTCTACCTTCGCCCTCTACTGGCAGGTTTAATCAACCCATTTGGCTCCAGCTACAAGCTGATGACAACGACGGCATGGACTTAACGCAGCACCTTACACAAGATCCAAACTCCTCTATGGTTTACTCAGAGCCCGGAGGGCCTCATCTGAAACAAGTAAACTCTGTGCAAAAAGactGTTCATTGCAAATGTCCCTTAACCCTTCCCTGGCTCAACATCATCAACCTCAGTCCTGCTTGCAGCAACAGCTGAGTCACGAGCCTGGGACATCCGAAGATCACATATCATGGCCTCAGGCCAGTCTCCAAATGCAGGTTTCAGTGCCAGGAGATGGATCACGGTTCGGCTGTGGACTGAACTTCAGTTCTGAGTCCACGGAAAAACCACTGGGTTGCTCCAGCACACAGAATGTTCCCTGTTCTGTCTATACTGGAGTGCCTTTCAGCAGTGTGATCCAGCTGAGCAGGGAGCTCATGAAGAACTGGGAAGAAACTATATCTCACTATACGCCACCTCCAATGCTGAACCCGACACGCAGTGGCACAGGGCTCTTCTGCAACCTGCTGTCTTCCTTGGCTGTGGAAAACAGAGCACTGTGGACAAACGAGAGCAAAGATGAGGATTCACAAAGGTGCATAAATATTGGCCCAGAGTATCAAGTGGAGATACCAGATCTAATAACTGAAAGTGAACACGGCATGCATTCAGAGGAACTAGTCCGGGAGGAGttattatggaaaccttgggtgGAGTTAGAGGAACATGACATCCTCTTACAGCATGTGGAGAATCTTCTTGACCTGAGTGCCTCCAGTGTTCTGCCAGGAGGTGGCGCCAACTTGGAGCTTGCTCTTCATAGCCTTTCTTGCTGCCAAGGAGACATACTCGCAGCGCTGGAGATGCTGTTGTTTACAAACTCCCCTCCATCAGAAAACTATCACTATTCTGGCAAGGATATCTGGACTCCAAATGAACAGAAAATGTTCCATAAAGCATTCGCAATTTATGGCAAAGACTTCTCCTTTATACACAAAATGGTAAGAACAAAGTCAGTATCACAGTGTATTGAATTCTACTACAACTCCAAGAGACTTTCAGAGAAACAAAGGAagcagagggagagagaaaaggaAAGTTTGGAGGCAGAAAGACTTGCAGCTGTCATCAGTCAGGTTGCTCCTGCCCCAAAGATGATTGTGAATCAAGCCAATCTTGACAGACTGATTAATACTGCACCACTTCCCACAAGCTTTCCctgtaaacagtgtggaaaAATGTTCTATAAAATCAAAAGTAGAAACGCTCACATGAAGATTCACCGGCAACAGCAAGAGGATTGGAGAGAAAAGTTACAGATAACCTCAAACCACCATCATGGTCTTAACCTGACTAGAGCACTGGCTCATCCAAACCAACAAATTTTAACACAGACCCACCATCAAAATCATATCCTAACCCAAAGTCTCATTCAGAATTTGGTCCAGTCACAAAATCAGTTAGCTTTTCTACAAAGCACAAAGACTCCACATGCATGTCAAACCAGTAGCACCAATTGCATGACTCCCACCCAGAACCCTCAGATCGTGTCCAAAGCAACTCCTTTACCACTCCACACTGGACATCAGACATGGAGCTCCCTGCATGGTGTAGAAACTAGTGGCCTTTTCTATAACAGAAGCTCTTTGGTAAATGGACTTCACTTGGCCATTCACGACAGTGTCGGTAAGCCATGGACTGATACTCAATAACTGACTTTTGCTAAACTGACTTGTACAGTTTGATTTAAAGCCTTAATACAACTCATTAAAAGATCAGCTTTC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016575 histone deacetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0000118 histone deacetylase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141219-47 Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation; negative regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex.

Ensembl:

ensembl_id ENSDART00000169661

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068811 lncRNA upstream 21151 20536652 ~ 20542154 (+) True XLOC_033621
TCONS_00065783 lncRNA upstream 38621 20524127 ~ 20524684 (+) True XLOC_033620
TCONS_00068567 lncRNA upstream 45474 20516008 ~ 20517831 (+) True XLOC_033618
TCONS_00068810 lncRNA upstream 46039 20511761 ~ 20517266 (+) False XLOC_033618
TCONS_00065777 lncRNA upstream 86184 20476288 ~ 20477121 (+) True XLOC_033616
TCONS_00065792 lncRNA downstream 72059 20649666 ~ 20650542 (+) True XLOC_033625
TCONS_00068568 lncRNA downstream 219395 20797002 ~ 20831570 (+) True XLOC_033627
TCONS_00068569 lncRNA downstream 291436 20869043 ~ 20876762 (+) False XLOC_033628
TCONS_00068570 lncRNA downstream 334305 20911912 ~ 20915912 (+) True XLOC_033629
TCONS_00068812 lncRNA downstream 518519 21096126 ~ 21161309 (+) False XLOC_033632
TCONS_00065784 mRNA upstream 20760 20535869 ~ 20542545 (+) False XLOC_033621
TCONS_00065782 mRNA upstream 32858 20524064 ~ 20530447 (+) False XLOC_033620
TCONS_00065781 mRNA upstream 41697 20518218 ~ 20521608 (+) True XLOC_033619
TCONS_00065780 mRNA upstream 47878 20512419 ~ 20515427 (+) False XLOC_033618
TCONS_00065778 mRNA upstream 54534 20503344 ~ 20508771 (+) False XLOC_033617
TCONS_00065787 mRNA downstream 9899 20587506 ~ 20596239 (+) False XLOC_033623
TCONS_00065788 mRNA downstream 9941 20587548 ~ 20600570 (+) True XLOC_033623
TCONS_00065789 mRNA downstream 51804 20629411 ~ 20636877 (+) True XLOC_033624
TCONS_00065790 mRNA downstream 67514 20645121 ~ 20651736 (+) False XLOC_033625
TCONS_00065793 mRNA downstream 79335 20656942 ~ 20665339 (+) True XLOC_033626
TCONS_00065774 other upstream 91942 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065712 other upstream 1536235 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065710 other upstream 1547794 19014767 ~ 19015511 (+) True XLOC_033581
TCONS_00065709 other upstream 1554726 19007840 ~ 19008579 (+) True XLOC_033580
TCONS_00065656 other upstream 3216166 17346399 ~ 17347139 (+) True XLOC_033546
TCONS_00065791 other downstream 67574 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065803 other downstream 1054493 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other downstream 1143521 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065845 other downstream 2218476 22796083 ~ 22800865 (+) False XLOC_033659
TCONS_00065856 other downstream 2232341 22809948 ~ 22820816 (+) False XLOC_033661

Expression Profile

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