XLOC_033617 (si:dkey-19b23.12)


Basic Information

Item Value
gene id XLOC_033617
gene name si:dkey-19b23.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20503344 ~ 20508771 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065778
AATCATTACAGGCTGTTTCTGATCAGAGTGTGTCTAGCAAAGACTTTCCAGAACCAGAATTACAGGCACCATGGATCCAAAGCAAATGTTCAATTACGTGAAATCTCCTCCAATAACTAGTATAGCATGTCTCGTGATCACAAAACTCCTATTCCTGGCTCTTCCCATTGCCCAAATTGCCATAGGCGCAGTGTATCTCCAAGAATGTCCCCAGCAGAGTTATATCCCAGTGTATGTGCTGGTCACTGGAGTGTTCAGTGTGTTTCTGGCCTTGTTGACATGTCTGCCCTGTTCTAAAGAGCCAGAGGAGGGAGGCAACAGAGCTTTCGGCATGGCCTGCAATGTGTGGAATGCTCTGGTTTCTACTTTCCTGGTTTGCTGGGTGATCACTGgcaGTGTGTGGATTTACTCTATTTACCCTCCTAATTACAACACAACTGTGGCTGGAGTTCCCTACTGCGATAAGACCCTCTACTTGTTTGCATTCTGGACCACCACCCTGGGCTACATTCTGATAGGTTTAGCACTGTTAATCGGCTGCTGCTTTTGTGTATGCACTTGCATTTGTGGCTTAGCCAAAGCTTAATTAAATGTGTGGGCCATTGTAATGGATATAAATTGCAGAGCTCTTGTTGGTTggtaaactaaactgaacttgaaTATGTTTACAACTATTATTTAACAGTTAAAAGTCATTTGGAAGTACTTGGTATCATTTTGAGGATTGAAATGTAAGACAACTGacgttattatatatattttttgtttacaatgaATGTCaattttgttttactatttaAGATTGTTGAAAGATGAATGGAAActgaataaatgacattttcatGACTCaccaattttaaaacaaa
>TCONS_00065779
GCACCATGGATCCAAAGCAAATGTTCAATTACGTGAAATCTCCTCCAATAACTAGTATAGCATGTCTCGTGATCACAAAACTCCTATTCCTGGCTCTTCCCATTGCCCAAATTGCCATAGGCGCAGTGTATCTCCAAGAATGTCCCCAGCAGAGTTATATCCCAGTGTATGTGCTGGTCACTGGAGTGTTCAGTGTGTTTCTGGCCTTGTTGACATGTCTGCCCTGTTCTAAAGAGCCAGAGGAGGGAGGCAACAGAGCTTTCGGCATGGCCTGCAATGTGTGGAATGCTCTGGTTTCTACTTTCCTGGTTTGCTGGGTGATCACTGgcaGTGTGTGGATTTACTCTATTTACCCTCCTAATTACAACACAACTGTGGCTGGAGTTCCCTACTGCGATAAGACCCTCTACTTGTTTGCATTCTGGACCACCACCCTGGGCTACATTCTGATAGGTTTAGCACTGTTAATCGGCTGCTGCTTTTGTGTATGCACTTGCATTTGTGGCTTAGCCAAAGCTTAATTAAATGTGTGGGCCATTGTAATGGATATAAATTGCAGAGCTCTTGTTGGTTggtaaactaaactgaacttgaaTATGTTTACAACTATTATTTAACAGTTAAAAGTCATTTGGAAGTACTTGGTATCATTTTGAGGATTGAAATGTAAGACAACTGacgttattatatatattttttgtttacaatgaATGTCaattttgttttactatttaAGATTGTTGAAAGATGAATGGAAActgaataaatgacattttcatGACTCaccaatttt

Function

symbol description
si:dkey-19b23.12 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-440 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000100712

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065778 False 866 mRNA 0.40 5 20503344 20508771
TCONS_00065779 True 793 mRNA 0.40 4 20505311 20508763

Neighbor

gene id symbol gene type direction distance location
XLOC_033616 si:dkey-33c9.8 coding upstream 575 20467549 ~ 20502769 (+)
XLOC_033615 NA coding upstream 38537 20453126 ~ 20464807 (+)
XLOC_033614 si:dkey-33c9.6 coding upstream 66563 20383841 ~ 20436781 (+)
XLOC_033612 ponzr1 coding upstream 133475 20344032 ~ 20369869 (+)
XLOC_033611 acadvl coding upstream 169820 20298333 ~ 20333524 (+)
XLOC_033618 NA coding downstream 2990 20511761 ~ 20517831 (+)
XLOC_033619 zgc:103586 coding downstream 9447 20518218 ~ 20521608 (+)
XLOC_033620 slc3a2a coding downstream 15293 20524064 ~ 20530447 (+)
XLOC_033621 zgc:158423 coding downstream 27098 20535869 ~ 20542545 (+)
XLOC_033622 si:dkey-19b23.10 coding downstream 54534 20563305 ~ 20577607 (+)
XLOC_033599 NA non-coding upstream 838683 19664036 ~ 19664661 (+)
XLOC_033598 NA non-coding upstream 864955 19636729 ~ 19638389 (+)
XLOC_033592 NA non-coding upstream 988441 19512765 ~ 19514903 (+)
XLOC_033585 NA non-coding upstream 1329382 19173197 ~ 19173962 (+)
XLOC_033627 NA non-coding downstream 288231 20797002 ~ 20831570 (+)
XLOC_033628 NA non-coding downstream 360272 20869043 ~ 20908661 (+)
XLOC_033629 NA non-coding downstream 403141 20911912 ~ 20915912 (+)
XLOC_033632 NA non-coding downstream 587355 21096126 ~ 21313684 (+)

Expression


Co-expression Network