RNA id: TCONS_00068569


Basic Information

Item Value
RNA id TCONS_00068569
length 539
lncRNA type sense_over
GC content 0.42
exon number 2
gene id XLOC_033628
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20869043 ~ 20908661 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATGCATCCGAAGTGAAGACCGTAGAGTTCGACTGGGCGACTGGACAGTACAACCGCATCGACAGCTCCAGAAAGACGATAAAGGAGGGAGAGGGACTGTCGGCGTGAGGAGAGGGTCACCATCTGGGACCTGGTCCACACAGCATTGCCAGTATAGCAAAAAGAGTTAGAAAGGTTCACATACAAATAGACAAAGGGAGAAGCTTATTTGGGGTCATACCTGCTTCTGGCTGCTGTATAGTCAACAAGttagtcttttcttttttttgtttgtctattttTTGTTCGCTGCAGTCAATCGACTTTAGACGTCAGTATCAAAGCTGCAGTTTTGCAGTCCAACAGGTATTATACATTTTAGAGGgctttattcattttttggatttccatttgtgttttatttgtttgtttgttttcatcgGCTGTGAACAAGAGAGCACTTAACGTGTCTGACCTTTTGTATTTCTGCTCTCTTGCACATACACCCTATATAAGGCAGCTATAAATCATCTTCTCTCTTAAGTTGGCTACtctaaaa

Function

GO:

id name namespace
GO:0046031 ADP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0048017 inositol lipid-mediated signaling biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0014065 phosphatidylinositol 3-kinase signaling biological_process

KEGG:

id description
ko00904 Diterpenoid biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068568 lncRNA upstream 37473 20797002 ~ 20831570 (+) True XLOC_033627
TCONS_00065792 lncRNA upstream 218501 20649666 ~ 20650542 (+) True XLOC_033625
TCONS_00065786 lncRNA upstream 291436 20571991 ~ 20577607 (+) True XLOC_033622
TCONS_00068811 lncRNA upstream 326889 20536652 ~ 20542154 (+) True XLOC_033621
TCONS_00065783 lncRNA upstream 344359 20524127 ~ 20524684 (+) True XLOC_033620
TCONS_00068570 lncRNA downstream 35150 20911912 ~ 20915912 (+) True XLOC_033629
TCONS_00068812 lncRNA downstream 219364 21096126 ~ 21161309 (+) False XLOC_033632
TCONS_00068813 lncRNA downstream 219425 21096187 ~ 21161309 (+) False XLOC_033632
TCONS_00068814 lncRNA downstream 219425 21096187 ~ 21180812 (+) False XLOC_033632
TCONS_00068815 lncRNA downstream 943539 21820301 ~ 21831281 (+) True XLOC_033636
TCONS_00065793 mRNA upstream 203704 20656942 ~ 20665339 (+) True XLOC_033626
TCONS_00065790 mRNA upstream 217307 20645121 ~ 20651736 (+) False XLOC_033625
TCONS_00065789 mRNA upstream 232166 20629411 ~ 20636877 (+) True XLOC_033624
TCONS_00065788 mRNA upstream 268473 20587548 ~ 20600570 (+) True XLOC_033623
TCONS_00065787 mRNA upstream 272804 20587506 ~ 20596239 (+) False XLOC_033623
TCONS_00065796 mRNA downstream 41204 20917966 ~ 20939108 (+) True XLOC_033630
TCONS_00065797 mRNA downstream 89118 20965880 ~ 21089475 (+) True XLOC_033631
TCONS_00065798 mRNA downstream 303985 21180747 ~ 21313684 (+) False XLOC_033632
TCONS_00065799 mRNA downstream 396071 21272833 ~ 21313684 (+) False XLOC_033632
TCONS_00065800 mRNA downstream 398390 21275152 ~ 21309848 (+) True XLOC_033632
TCONS_00065791 other upstream 217312 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065774 other upstream 397680 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065712 other upstream 1841973 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065710 other upstream 1853532 19014767 ~ 19015511 (+) True XLOC_033581
TCONS_00065709 other upstream 1860464 19007840 ~ 19008579 (+) True XLOC_033580
TCONS_00065803 other downstream 755338 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other downstream 844366 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065845 other downstream 1919321 22796083 ~ 22800865 (+) False XLOC_033659
TCONS_00065856 other downstream 1933186 22809948 ~ 22820816 (+) False XLOC_033661
TCONS_00065868 other downstream 2408273 23285035 ~ 23285151 (+) True XLOC_033666

Expression Profile

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