RNA id: TCONS_00065862


Basic Information

Item Value
RNA id TCONS_00065862
length 6823
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_033663
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 22853788 ~ 22900344 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACCACTCACTTTTATTTGAGGAAGGGATCGGTTTTGAAGCGAACCCCCTCAGTGATGCCTCTGTACACTGGGAGACCGCCTTTCCCTTCAGGCTTGATCCCACGCTAGAGTTCTGTGGAGGCGAGAGATGCTTTACCGGGAAAACGGTGACGCAGCAGCTGACGGAACTGACAGACGTCGGCGTCGTATTGCTTAACCGAGAAGAGCTTTAAAATCCAGATCACAAGACTTGGCGTCCAGGAGTCCAGTGCTGGTGGAGGAAACCACCAAAACTGCGCGAAGACCCTGAAAGATGGACAACGGAGGGTTTTGCTATGACAATTATCACAGTGGAAGCAGTGACGATGAGCTGGTGGATATTTCTGATGTCACGGTGGACTACAATGAGGATGTCCCACCGTTGGATCGAGATTACAGCACAGGCCATTGTAAAGCAGATTGGAGACCGAACAGCAGTCCCAAGCTAATGGATCTGCTGGATGTTTCTGGCATTGGCACCTATGAGGACTTCAACACCATTGACTGGGTCCGAGAAAAGTCCAGAGACAGAGATCGACATCGAGAGATCACCAACAAGAGTAAGCATTCAACTCTGGCTCTGCTCTTCAGCATCAGTGATGCCTTTTCTGGCTGGCTTCTGATGCTTCTCATTGGACTCATGTCAGGGGCTTTGGCTGGAGGTATAGACATTGCTGCTCATTGGATGACTGACCTTAAAGAGGGCGTGTGCCAGGACGGGTTCTGGTTCAATCATGAGGACTGTTGCTGGACGTACAATGGGACCACTTTCAAGGAAAGAGACAAGTGTCCTCAGTGGAAGAGCTGGGCAGAGCTCATGGTTGGAGTCAGTGAGAGCACTGTATGGTATGCGTATATGGCGAGTTATTTTATGTACGTGTGCTGGGCTCTTTTCTTCTCCTTTCTGGCTGTGATCCTCGTGAGAGCCTTTGCTCCTTACGCTTGCGGTTCAGGAATTCCAGAGATTAAGACCATCCTGAGCGGCTTTATCATCCGAGGGTACCTTGGCAAGTGGACTCTGATCATAAAGACCATCACGCTGGTGCTGGCCGTCTCGTCCGGCCTCAGTTTGGGGAAGGAGGGTCCGCTGGTTCATGTGGCCTGCTGCTGCGCAAACATCTTGTGCCATTTCTTCACTAAATACCGTCGAAACGAGGCCAAGAGACGCGAGGTGTTGTCTGCAGCATCTGCAGTTGGAGTGTCTGTAGCCTTTGGTGCTCCTATAGGAGGTGTGCTTTTCAGTCTTGAAGAGgtCAGCTACTACTTCCCGCTGAAGACTCTGTGGCGTTCATTCTTCGCAGCTTTGGTTGCGGCTTTCACCCTTCGCTCCATTAATCCCTTCGGCAACAGCCGCTTGGTGCTTTTCTACGTGGAGTTTCACACTCCCTGGCATTTCCTGGAACTCATACCATTCATCCTTCTGGGCATCTTTGGTGGCCTTTGGGGGGCTTTCTTCATTCGTGCCAACATTGCCTGGTGTCGTTTGAGGAAGAACACCAGCTTTGGCCACTACCCCGTCCTGGAGGTCATAATAGTCACCCTGGTCACTGCATTTCTGGCATTCCCAAATGAGTTCACCCGCATGAGCAGCAGCACATTGATCTCGGAGCTGTTCAATGACTGCAGTCTGCTGGACTCCTCCAAGCTCTGCAATTATACTAGTGTCggtggaggaagaggaggaagtgTCAATGCTACTATTGCTAATGCTCTGGCGGATCGGCCGGCTGGGCCAGGGCTTTATACGGCTATGTGGCAACTGGCTCTTGCACTGCTCTTCAAGATGGTCATGACTGTCGCAACTTTTGGCATGAAGGTGCCGTCTGGTCTATTTATCCCCAGTATGGCGGTCGGGGCCATAGCCGGCAGACTTCTGGGTGTTTTCATGGAGCAGCTGGCTGTCTACCACCACGACTGGGCCATTTTCAGAGGCTGGTGCTCTCCTGGGACGGACTGCATCACGCCAGGCCTCTACGCCATGGTGGGCGCAGCAGCCTGTCTGGGTGGAGTGACCCGTATGACGGTCTCTCTGGTGGTCATCATGTTTGAGCTGACGGGGGGTTTAGAGTACATTGTACCTCTTATGGCTGCTGCGATGACCAGCAAATGGGTTGCGGATGCCTTTGGTCGCGAGAGCATCTATGAAGCCCACATCCGTCTCAATGGCTACCCCTTCCTAGAAGCCAAGGAGGAATTTCGCCACAAGACTCTTGCCACAGATGTGATGCGTCCCCGACGGAGCGACCCGCCACTGTCAGTGCTCACACAGAGCGGTATGAGTGTGGAGGAGGTGGAAAGACTCATTGCAGACACCACCTACAGCGGCTTCCCTGTGGTCCTCTCACTGACGTCTCAGAGACTCGTGGGCTTTGTATTGAGGAGGGATCTCATCATTTCTTTagaaAATGCACGGCGGCATCAGGAGGGTGTGGTGAGTGTATCTGCAGTCCTGTTTACAGAATGTGATCCACCCGCGTCCCCAAATGCTCCTCCTGCGGTCAAACTGCGCAGTATTCTGGACCTCAGCCCCTTCACGGTCACCGTGCATACGCCAATGGAGATCGTGGTGGACATCTTCCGCAAACTCGGCCTGCGGCAGTGCCTTGTCACTCAAAATgggcgTTTGCTGGGAATCATCACTAAAAAGGACATTCTTAAGCACATGGCGCAGATGGCTAACAGAGACCCGGATTCAATCCTCTTCAACTGAAGACTCTCAGGATTGGACagagaggacacacacacacacacacacacacacacacacacacacaccgaggaCTAAACTATCATgtggttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttgtgtgtgtttgtgtgtcttgcTGAGGTACTGTTATAGAGTGGTGTGAAAGTGGCCCAAGGCAGCTTATCGTTACTCCAGAACTGGACATGTTTAGACAAGAGCTGTTTAGCCTGTCTGGAGGCCAGAGGGACGTATATAATGTGAGGAATACTGTCCTCTCACACCTGTGAACCTATTGGGCCATATCTCAGCTTTTGCCATCAGAACTTACTGAATGTGGACCAGCTCTGATTCCTGCCAAGACATATATTTTTGGGATCAACAATTTTTTGGGGTGGCtctatgttcatttatttgaatgtaaaGTATTCTTAAGATGGTTACAAGGCTCTTGGGCTGGTCTTGGTTGCTGGTTTTGCACATATACAAAGCTGGGAGACCAACTGCGATAGTTTAacaaggatagttcacccaaaattgaaaacacTTCTTCTTTTCTTGCtgatttttccaatttttttttttttattttatagcattTTCGCTATACTTTAGATGTGTGTGGCTACTTTtttcaaaattcttcaaaatatttactAACAAAAAATATCTATCCAACAAGAATGTTTGGAATTACTTGAGGATGAGCAGATGGGGCATACATCTAAACTTCTGAGTTAACCATTTCTTTGAAGATGGTCTTTCAGGTTGATCTGGGTTACTGGTTTTAGACATTTACCAGGTAACAAGACCAGCTAGCCAAGATCCTCTTAAACCAAGGTCAGCAAAACGAGtagattaagctatttttttaacagGGATTCCATCCCTGGAGTGACGTCTGATCTCGAGAGGAACTTCAGAAGGGTGAGAACATTCCTCTGATGATCTGGGGAACGTGCGCTCATGGTGTCTTGTCTGAACCTGCGTGTGTCGAGTGATCCCTGTGGGAAGATGTCTTCTTGAAGTGCGCTGAAATTTGGTGCATCATGTTCAAAAGTCAGAGAGGCGCCTAGTCTTACCTGTTTGAGAGGGTTTAAATGTACTAAAGAATCTAAATATAGTCTAAATGTACATTTTGGAGGCATGCTTTAACCAAAAATACTTAATATTTCCTCAATCTCAAgaggttccaaacttttatgggTTTCTAtcttctattgaacactaaagaagctCTTATAAAGAAAGATGAAATTGTAAACTTTCCTTTCATAGAAGGGAAAGctaatactattgaagtcaatggttacaggtttgaaTCATTCTGCAAAATATCTCCTTTAGTGTTCAATACAAgtaagaaacttaaacaggtttggaataagttgAGGGTGAATacatgatgagagaattttcagttttggatgaactatccctttatcttaaattaaataaagtgagttttgatATTATGACAAAAGGTGCCTTAAAGGATGTAACCAAATCTGTAGTCCTTTACTAAACCTGTTTGACTCTGTCTTCAGTGGAACACACACAGTTTGGGTGCCAACATTCTCTGAAATCTTTCCATTTGTGTTCTGCAGAAGTAAGAAAGTGCCTTTGGATGCCTTCGGTAGTTCATATTAAGTTAAAATGCCCTGGTTCTACCTCTGTCTCTCTCTTGCTTAGTCTAACAAGGGGCTTATGTTTTTTCCAATTTTCACTCTGCTCCCCAAATGAATCAGTCTGTAGTTTCTGTTTGCTCCCAGCAAGAGGCACTGTCTCCCAGATTGACCAATCTGGACATTCTGCACCATCTGATTGATTCTTGGCTCGCTTTTCTCTCTGGGTGTGTTGCGGTATTCTCTCATGTCATTACATTAGGGACTTTTTCATGCTCATATTGAGCACCTGGACCATTCAGCGCAGTCTTTAGAGATGCGAATCCACTCGTCTGTCCATCACCCTCGCTCGTCTTTCCTATGTAACCGCAACTGTCGTCCTCAAGCAACCTCTGTAAAGCATCTTTCGGCACCTCCCTTGTTTGGCTGTGAGGATCCGATCATGACATAACGAGATCCTCCCTGAAATGAAAGGCTAAACTTGTACGCAGACCCCTTCTTTGGCATGGtcacttgactttttttttattgttaatgtagaAAAACCCTCCACCCTTCAGTTTTTTTTGCTCCCTGCAATGGCATTTGGGTTGTTTATAGCCTATTAATGGCATTCAACTCTTTTCATGCCAGGTCTAAACTCTGACTCTTTCCCGGCTCGCCGTAATTCCCGGGAGCTGGAACTCGGGCAGGGAGGTCTTGCAGGGCTATTGTTCCCATTCGCTCCTGCTCGTCTGGGCTCCCGGTCGCCAGGATGTCCCCCGACAAGCACCGGCACGCAGTCCCGACCGCCTTCCACTCTTAGACTTTTTCCGGTCCCGTCTTTAAACAACGGCACAATTATAATAGAGCAGAGGAAAAAAGAAATTCTTGCACTCTGATTACTGAAAGAAAAGGTGTTTGTGTGGGAGATTATGCTTTTCTCTTTTGCCCTGCTAAGGAAAACATGGGAATATGGGAGGAGGGAGAGGAGAAAAGGTTAATTAAACAGTGTTCAGTGGTCAGTGGAAGGATCGTTTCACAAAGGTCTCCTCTGTGTCACACGGTGGGGTTATTGGAGAGTCTTGGCACGGAGGACTTTCACTCATTCCTGCAATCCGGGTGGGTGCTGAGCCTCTTTGCACTGTAACCCAAGCCTTGATTGGTGCAGAAGGAGCTGAGCCAGGACCGGGACCAAATGAAATGTTGTAATGTAAAACAGGACCTCCTACGTTCTTATCTGGAGAACCTGGACTTCCACTTCTCAACTCAGGGAGGCAAACAAACAGCATGTAAACAGCTGTTTAGTTGGCATTTGTACGCAAACAGCCGGTTTAGGGATGAGGACAAATGCTAAACCTGAGTAAACGGGCGTCAGCGAGTGTGTTTACGACATATATCTGAAGAAACCTGTGATTTTTCTCACCAAAAAAAGAAAGGTGATGCTGTTATTGCTAAAATAATTTATTCCAAAGCACTCCTCGGAGATAAAGAGTTTGTCTCTTTTTATTGTTGATAAGAGATGTTAActgtaatatgtatttattttgcacAGATTATGTTTTCTATTGCAGTATTTGTACGTGATCGATTTCCGTCACATTGTCAAAGGAGCGTTTGTTCATTTGAATAAATCCAAAATGCAGACTATATCCATCTGGAGGTCATATGGCTTGCGTTTATAGCTCAGATGTATAAAGAATCACTTGTGGGTTTAAattcttcatattttttttaaattatcttgCATAATCAAAGTATTAAGGACATTAAAATTCCAGAAACATGAGCATTTTATTCAGTGAAATCTCAAATGGTTCTGGTGGCTGTCGAAGCAGCCCCACACTGGTTTGTGTTAAATGTGGTATTTGAAGGAAATTGCTGAGGGTCTCTTAAAACACCGCAGGATTGTGGGGAGAGTCTTATTTGATATTGCCTCTGAACGCTGACTTTCTCTCACCTTTTGAAGGCCAGCGTTTTAATAACGTTTTTTTGCTACTTTTTTATCACGAATGTTTACTTTTGAAAACCCCCAAATGCTGCTTGAAGTTGCAACAGTGTGAATTTATTTGTctctggttttgttttgtttgaggaGATTGTTCACAGATGATTTAGAGTATAATTGTATGCGAGTCTTTGAACGAGTCACACACCCTCATAATTCTTTGGTTCAggttaattttactttattagtTGTGTTTTGCTAAAACAGGCATCACAATTATGTACTTGCGGTTGTAAGTTTAGAACAAACTATAAAAGCGAGGATTAAACTTTGGCACATTACTTCTCCTGCGGAGATTATGCTTTAAAACTTAAGCCAAGTCTTCTGCAACTGATCGAAAGAGACAAAAAGCTTATAAAGACCACATATGAAAAAATTGCAGCTTATTGTAatgttatttactatttatttgtaATGATATTACAATTGAGATGTTGGCCTATGAATTAAAACTTAATCTTCACTTGCT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006821 chloride transport biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015299 solute molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function
GO:0031404 chloride ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110407-11 Predicted to enable solute:proton antiporter activity and voltage-gated chloride channel activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; early endosome; and synaptic vesicle. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Dent disease; X-linked nephrolithiasis type I; X-linked recessive hypophosphatemic rickets; and low molecular weight proteinuria with hypercalciuric nephrocalcinosis. Orthologous to human CLCN5 (chloride voltage-gated channel 5).

Ensembl:

ensembl_id ENSDART00000148502

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065857 lncRNA upstream 34791 22817272 ~ 22818997 (+) True XLOC_033661
TCONS_00065852 lncRNA upstream 50134 22801495 ~ 22803654 (+) True XLOC_033660
TCONS_00065847 lncRNA upstream 56191 22796276 ~ 22797597 (+) False XLOC_033659
TCONS_00065834 lncRNA upstream 146846 22702224 ~ 22706942 (+) False XLOC_033655
TCONS_00065830 lncRNA upstream 176661 22675830 ~ 22677127 (+) True XLOC_033652
TCONS_00065866 lncRNA downstream 86576 22986920 ~ 22991359 (+) True XLOC_033664
TCONS_00065867 lncRNA downstream 113602 23013946 ~ 23153185 (+) True XLOC_033665
TCONS_00068571 lncRNA downstream 663404 23563748 ~ 23564568 (+) True XLOC_033670
TCONS_00068820 lncRNA downstream 848135 23748479 ~ 23757190 (+) False XLOC_033672
TCONS_00068821 lncRNA downstream 852486 23752830 ~ 23757190 (+) True XLOC_033672
TCONS_00065861 mRNA upstream 1599 22849657 ~ 22852189 (+) True XLOC_033662
TCONS_00065858 mRNA upstream 1614 22823889 ~ 22852174 (+) False XLOC_033662
TCONS_00065859 mRNA upstream 1614 22823898 ~ 22852174 (+) False XLOC_033662
TCONS_00065860 mRNA upstream 2042 22823974 ~ 22851746 (+) False XLOC_033662
TCONS_00065853 mRNA upstream 32972 22809905 ~ 22820816 (+) False XLOC_033661
TCONS_00065863 mRNA downstream 81097 22981441 ~ 23006732 (+) False XLOC_033664
TCONS_00065864 mRNA downstream 81565 22981909 ~ 23004700 (+) False XLOC_033664
TCONS_00065865 mRNA downstream 81857 22982201 ~ 22991307 (+) False XLOC_033664
TCONS_00065869 mRNA downstream 391789 23292133 ~ 23494310 (+) False XLOC_033667
TCONS_00065871 mRNA downstream 557459 23457803 ~ 23494298 (+) True XLOC_033667
TCONS_00065856 other upstream 32972 22809948 ~ 22820816 (+) False XLOC_033661
TCONS_00065845 other upstream 52923 22796083 ~ 22800865 (+) False XLOC_033659
TCONS_00065803 other upstream 1101027 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other upstream 1101027 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065791 other upstream 2202057 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065868 other downstream 384691 23285035 ~ 23285151 (+) True XLOC_033666
TCONS_00065870 other downstream 461818 23362162 ~ 23362245 (+) True XLOC_033668
TCONS_00065890 other downstream 1133557 24033901 ~ 24040056 (+) True XLOC_033679
TCONS_00065893 other downstream 1172037 24072381 ~ 24072484 (+) True XLOC_033682
TCONS_00065894 other downstream 1174517 24074861 ~ 24074975 (+) True XLOC_033683

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000161_00274924_00298938.mRNA True 2432 mRNA 0.48 9 CI01000161 274924 ~ 299299 (+)