XLOC_033745 (mpdu1b)


Basic Information

Item Value
gene id XLOC_033745
gene name mpdu1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26466826 ~ 26473483 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066006
gccacgtgactggaTTTGACGTTTGCAATCATGGCGGCTTCTGAAGCAGTTGTAGAAACATCATTCATGGATCCTTTCAAAGATGTTCTGGTTAATTATTTAATGCCAGAAAAATGCTACGACGAGTTCTTTTTACAGTTCAATCTTCTGCACGTGGATTGTCTGAAGATTGTAATCAGCAAAGGCCTGGGCATTGGGATCATCCTTGGTTCTGTATTAGTGAAGCTACCTCAGATTCTGAAGCTGCTTGGTGCTAAAAGTGCAGAGGGACTGAGCTTTAACTCTGTGCTGCTGGAGCTGTTTGCCATCACAGGCACCATGGCCTACAGTTTAGCCAACAGCTTCCCCTTCAGTTCCTGGGGTGAGGCACTTTTCCTCATGTTTCAGACTGTGACCATTGGTTTCCTCATACAGCACTATGGAGGAAAAActattaaagGTTTGGGCTTTCTAGTGGTTTATTTTGGTCTGTTGGCAGTCCTTCTCTCTCCTGTGACTCCCTTGTCGGTTGTCACTACCATGCAAGCCTCTAATATGCCAGCCATCATCTTTGGACGGTTAATTCAGGCCGGTACCAACTACAGAAATGGTCACACTGGGCAGCTATCGGCTATTTCAGTGTTTCTGCTGTTTGCAGGCTCTCTGGCACGCATATTCACTACAGTGCAGgaaACCGGAGATTCCCTCATGGCCGTCACCTACATAATCTCCTCCTGTTGTAATGGTGTGATCGCCGCGCAGGTCCTCTATTACTGGAACAGCAGCCCTGCGctcaagaagaagaagaagactcaGTAGATCAGAGCGAAAGGCAAACTCGCTGACCGCTCAAGCCAACACACTGCACAGAACAGGGATCAGTTCAgtgttctaataaaaaaaaacggtTCTTATGAAATTGAGCTCTGCCCTGAAAACACATGCATTTGTTAACCTATCAGTGCATGAAAGGCAGGTACAAATACTGTAAAAGTGTACACATTTATGTATTCCAGGTGCCCTAAAATGGACCAGAAAGCCAGTATCGTGAGGTACTGTAGGTATACAGGCTTTTCTTCCCCCTTTTAATTCCATTTATTGTAGTGGGTTGTTTAATTAGACGTGTTTTGAAGCTCAGGGAGTGGTGTTCATAATATTCCTGCTTTGGTTTTTTCAATTTTCATTCAGTTAAATTGCAATTTCTATTAAAACCAACTTATCCATTCTGAATTAAACCAATCTgtgaggaaaaaacaaacaaacatccagGCTGGGTTTTGTAGACCAAATTGTACCAAACGATGTTTTAGTCCATGCTCTCGCACGTATGAAAATATGTGTTGTTATTATATGCTGAAGGCAGTCCTACTGGAACATCAAAAAGGCTCTTGTTCTAATTGTGTAGACATTCAACCATATGGACACTATTCACGTCTTCCAGCACATATAACTGCTCATGTTGCTTTGGACTGTATACAACACATTTCATTGTGTTTTTGACATATTAAAGATTTCCCTTTAGGTTATCTAAAGAGTTAATTACTGTTTCTTGTCAATCTTGCAGTTGTACATGTAGCCATGCTGTTAAGTATCACCATGACTAATGGGAATTGGTTAAATTATGAAATTTACTACGCTACAAGGCACTTTTTCCGGTTTGTTCTAGATTTTACTATTCACCCATCAATTACAAGTTGTCTCATGCTGTCTGAAGTTGAAGGAAAAAGTTTGGTTTGAATGATGGAAATTGCATATTTGCACACAGtatgtttgtgaatttatttCCAGTTTGCTCATGTATTGGTCTTTGTTGGTGTATTTCAGGAATGAAACATAATTGACTGTGATTATCGTTTTTCCATATCtgagttttagtttgtttttttttttttgttttttttgtttttttgaccattgagcaaaactttccatcagaTAATTGGTAGTGTTCTTTGTTTGCAAAGTATTTCCTCTGGTTTGAAAGGCTTTGGGGAAATAACAAACTGTTTAAACCCTTTAAATAAACGGTTTTATTCTTTA
>TCONS_00066007
GGCTTCTGAAGCAGTTGTAGAAACATCATTCATGGATCCTTTCAAAGATGTTCTGGTTAATTATTTAATGCCAGAAAAATGCTACGACGAGTTCTTTTTACAGTTCAATCTTCTGCACGTGGATTGTCTGAAGATTGTAATCAGCAAAGGCCTGGGCATTGGGATCATCCTTGGTTCTGTATTAGTGAAGCTACCTCAGATTCTGAAGCTGCTTGGTGCTAAAAGTGCAGAGGGACTGAGCTTTAACTCTGTGCTGCTGGAGCTGTTTGCCATCACAGGCACCATGGCCTACAGTTTAGCCAACAGCTTCCCCTTCAGTTCCTGGGGTGAGGCACTTTTCCTCATGTTTCAGACTGTGACCATTGGTTTCCTCATACAGCACTATGGAGGAAAAActattaaaggtaaataaaagaTCATCTCATTACAATTTTACAGCTGTGTTCACACTGACTTGCTTCTCAGTTCATCATATGGTCTATCAAAATGggaaagaaaatgaaatgtttaGTCCTGATTTGCTCTGTGCTCACACTGTCATTTTATAACTACATTtccatttagtcatttattaaatgcttttgtacatcgtgacttacaattaaggaggcattcagcgattcaacaagaggcAACACATGGAAGTAGTGCTAATTATGCAAAGGAGTCATTTACGCTCAGATAATTAATTGCTAGAGTTAGGAGGGAGTGTGTTATGTATCTTTTAAGAGAGAAgagggtttctacaggtggtttgtcgagcccactcacctgtgtgaagctaactttataaatgcacaatgtGTTTTTATAAGATG

Function

symbol description
mpdu1b Predicted to be involved in oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation If. Orthologous to human MPDU1 (mannose-P-dolichol utilization defect 1).

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-135 Predicted to be involved in oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation If. Orthologous to human MPDU1 (mannose-P-dolichol utilization defect 1).

Ensembl:

ensembl_id ENSDARG00000040265

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066006 False 2019 mRNA 0.40 7 26466826 26473483
TCONS_00066007 True 818 lncRNA 0.40 4 26466861 26469201

Neighbor

gene id symbol gene type direction distance location
XLOC_033744 NA coding upstream 72443 26388429 ~ 26394383 (+)
XLOC_033743 zanl coding upstream 101406 26326462 ~ 26365420 (+)
XLOC_033742 NA coding upstream 170314 26296277 ~ 26296512 (+)
XLOC_033741 NA coding upstream 176357 26285655 ~ 26290469 (+)
XLOC_033740 vgf coding upstream 236660 26224211 ~ 26230166 (+)
XLOC_033746 NA coding downstream 60531 26534014 ~ 26542423 (+)
XLOC_033747 tnk1 coding downstream 72019 26545502 ~ 26564784 (+)
XLOC_033748 NA coding downstream 138244 26611727 ~ 26616170 (+)
XLOC_033749 hsbp1a coding downstream 155601 26629084 ~ 26634061 (+)
XLOC_033750 tp53i11a coding downstream 175836 26649319 ~ 26704609 (+)
XLOC_033739 NA non-coding upstream 252976 26199414 ~ 26213850 (+)
XLOC_033735 BX470232.1 non-coding upstream 346090 26120631 ~ 26120736 (+)
XLOC_033752 CR394555.1 non-coding downstream 276988 26750471 ~ 26756182 (+)
XLOC_033757 BX927397.1 non-coding downstream 570232 27043715 ~ 27043842 (+)
XLOC_033758 NA non-coding downstream 571046 27044529 ~ 27048457 (+)

Expression


Co-expression Network