XLOC_033772 (ccdc102a)


Basic Information

Item Value
gene id XLOC_033772
gene name ccdc102a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 28724910 ~ 28837318 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066070
GCTCTTCCCTTCGGTGGGAAAATTCCTGCTGGAACATCCGTGCTGCATTTGAACTCGGGAATTGTAGCGGAAAAGCAGGAATCTGCAGCACACGCCGGAAGATTTTATCGCATGTTCTTTCCCATATCGTTCAGTTTCAGGTTGGAGTCGCAGGAAGGAAGTCTGACAGAATGGGAGTCAAGAGTCTAAAGGATGTTGTCTAAGGGGCCCATGACGACCCCCCTTACTCTCCTTACTGTAGAAACAACTGTTCATGCCGGCTTCAGAGAGCTCATAAGTCACCTTTTGGCCCTGCAGCAGGGGCCAGTCCAGCTGGGAATAAATGCACTACATCATTGGATATTCTGTGCCTTCCTGTGGCCAATTAGCTTGCACCCCAGGCCCATAAGCAGTCTGCCAGATGCACCATAGCAGTGGTCTGTGGCTTCGAGAAGGAAGGGCTGTGGCACACAGTCTATGAGTGGTTATTAGAGAGGCCCCTCTCTGAGTCCACACAAGCCTAGAGATTTGTTTCTTGCCCCTCGTTTAGACTGCAACCGGAATTGGGCCCCTCAGCCTGTAACATAAAAGAATTTGGATGTGTCTCTGTAAAACATTGTCCAAATGTGTCAGACCACATCGGGTCCCACTTTAACAGGATTATTCTGCCGAAACATTCTCAAAAGGACATCAGAGGATATTTTTAGGTATACGCCAGTGTGCAGTGCTCATGAACATGCACCCTATATTGAATTGAAGTTATTATTTTTGCTTCgtgtgcacaaaagtattcttAAAGATCACGTTCACAAGTAAACATTTTAACACTCACCA
>TCONS_00066071
TTCGGTGGGAAAATTCCTGCTGGAACATCCGTGCTGCATTTGAACTCGGGAATTGTAGCGGAAAAGCAGGAATCTGCAGCACACGCCGGAAGATTTTATCGCATGTTCTTTCCCATATCGTTCAGAAAAGCATCATCTTGACGTGCATCATGGATTCCTGATAAGATCTTCCTGACCGTAATCTTTTTCCCTGGACTCATCATTGGCTCAGTGATGAACCACACACCCAGTCCCCACATGACCGAGGCCGCCAAGTCCGGGGCAGGTTTGCTGTGCGGCTTGGGCTTGGGCCCAGATCGGGTGCGCTCTCCAGACAGCCTGACCCATACGCCCAGCCCGTCAGGGGGAACGCCCAGCTCCAGCCCTCCTCTGTTGCTCTCTCCAGGGCTGGGTTGCGATGGCATTGGGGACTGGGAGAGCCGCGAGGAGCTGCGTCTGCGGGAGCTGGAGGAGGCTCGGGCCCGGGCCGCTCAAATGGAGAAGACCATGCGCTGGTGGTCGGACTGTACAGCCAACTGGAGGGAAAAGTGGAGTAAGGTACGGGCTGAACGTAACCGGGCACGGGATGAAGTCAGACAACTGAGGCAACGCTTGGACGCTCTTACCAAAGAGCTGACGGGTGCTCGACGGGAGCGCCAGGAGCTGGCTGCGGAAAACGAACAGCTTCGTCTCGAGGCTCAAAGGGTCCGAGCTGAACAGAGCTCCCCAGAGAATGCATCTAATGCACCAGAATCAAACTCCTCCACTGCCTCCACACATTCCAACCAGCCAAGAGAAGCAGAGATTAAGCAGGACAACCAGGATGAGGAGGGTGTGAGAGATGGGCCTGGCTCTCCAGAGCAGGAACCTGTGAGAGACATAGGCACTGACAAACTATACAAGCAGAAGGAGATGGAGTTGTTGGAGGCTCTTCTCAGGGCAAAGTCAGAGGCTCCAGACTCGTGGGACGGTCGCAGTGCCAGTAGCTTGCGCTCTGCCCTCAGCCGGCAGGACAGGAACAGACTGCTGTGGGAGGATCTGGCTGCCCTGGAGGAGGACACCAGCAAGCTCAACGCTCTCCAACTACGCCTGGATGAATCCCAGAAAGTCCTGCTAAAAGAACGAGAAGATAAACATGCGCTTATTAAAAACATTGAGAAGCTGGAGGCAGAGCTGAGCCAGTGGAAACTCAAATATGAGGAGCTGAACAAGAGCAAGCAAGAGGCCTTGAAACagCTGAACCTGTTGAAGGAGGTGCATCAAGATGAACTTGGCCGCATGTCTGAAGACCTGGAGGATGAGTTGGGTGCCCGCACCAACATGGACAAGAAACTAGCAGAGCTTCGTACAGAGATGGAGCGTCTGCAGGTGGAGAATGCAGCAGAGTGGGGTCGTCGGGAGCGTCTGGAGACGGAAAAGCTGGCTCTGGAGAGGGAAAACAAAAAGCTGCGCACCCAGATGGAAGACCTGGAGGAGCAGCTGGCACGCAAGCGCAGGCAGGCCGCCAGCGCCCTGGACACCGACCTCAAGACCATCCAGAGTGAGCTGTTTGAGAGGAACAAGGAATTGGCAGATTTGCGGCACGTTCACTCCAAGGTGAAGAAGCAGTACCAGGAAAAGATGGCCGAGCTCACACATGCTAACCGGCGTGTAGAGCAGCATGAGGCAGAAGTGAAGAAGCTGCGGCTCAGGGTGGAGGAGCTGAAGAAAGAGCTGGGCCAGGCTGAAGATGAGTTGGATGAGGCCCATAATCAGACCAGAAAGCTACAACGATCCCTGGATGAGCAGGTGGAGCAATCCGAGAATCTACAAGTTCAGCTGGAACACCTACAATCCAGGCTAAGGCGTCAGCAGAACCCTGGCCTCTTTGGCAAAATGAGGACATCAGCTTCATCACGTTTTGGCCCTGAAGATGCAGACGGCCCTCCTAGCGACCCTGATGAAGATGAGGAAGAAGAACTGCAGCTCCAAATCCCCTGAACCCTTCACTGCAGACCTGGGAATGACTGAAGACTCACCGATCTCACTCGAGCATTTCACCTTCCCCTTCATTTCATCTCTCAGCGAAATCTAGAAGAGGACTTCACGACCCTCAGCAGACAGATAAACACAATCCTTTTTCAGTAGCCTATAATAAATGTGTGCCAGGGCCAAAGTACTGTCTGAAGCCTAAGAAAAACATTGCTGGTTCTAGTCCAAGTTGGCACATAGGTTATTGATAGACAAATATCAGAcccatttatttgacttttgagGGTCCATTTGAAGCCTAGTGATTCCTATTATTCACATAAGCAGACACATGTGCTGGCACACATTGTAAACGCATTAGAGCGTCCTCAAACTTTCAGACATCAAAACCATCTTGaaacattacatttcattttaatccCCCATCTGACCTCTAAAAGAAGCTGTTTATTCACACAGTTCTTCTTCATCAACCGTTTACATGCTCATTTCCCAACTTTATTCCTCATCACCTGGATTTTGATTTATTCTTGTCACCCATTCATTTCCACCGTTCCCATTTTACTCTTCCTATTCATTTTGATTTTCTATTTAATCTTTCGCCAGCCCTCCCACCCACCCCCATCCCTCAACAGCAACTCTCACATCAATATTCAAAACAACCCATTCAGAACATGATGATTATGTTCCTTGTGTCTGGGGAACATTTCATTTCTGCTGTGTTGTTACTGAAGAGGCAGGCGAGCGCTTTGGTTTTTGTTCTCGCCAGTATTCCTGCGTTAGTTGTCCCAAAGTTTTTTCTTGGTGACTATATTAATGTGTTTCGGTCTTGTTTTATATAGGAAGGAAGGGAGGGGGTGGGGGATCGTGGGTAGTTTGTAAACGAGTCTGTTGGATTCTTCTTAAATACATACAAGCATAATTGCTTCGCCCTTTTGCGTTCAACCTATAGAAAGGTGGCTGGTGCATGAGGGAATGTTTTAACAAATGGTCTGTTGATTTTAAAGAGATTTTTAAGCAATATAATACTGTATACGTCTGCAATGGGGACCAATCTTGACTCATCTTTTACTTGGACATTTGTATGGTCATATTAAAGTATTTAtcagatgtttgttttttacctAAGTGGCCTGTATTGcagtattttgtatttgtttgtgtttgtattttatctctataaatgttaaatgtatatacagtaaa

Function

symbol description
ccdc102a Predicted to enable cytoskeletal motor activity. Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016459 myosin complex cellular_component
GO:0003774 motor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4044 Predicted to enable cytoskeletal motor activity. Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A).

Ensembl:

ensembl_id ENSDARG00000003872

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066070 False 813 processed_transcript 0.47 2 28724910 28733520
TCONS_00066071 True 3156 mRNA 0.49 9 28724919 28837318

Neighbor

gene id symbol gene type direction distance location
XLOC_033771 slc7a6os coding upstream 101618 28612671 ~ 28623292 (+)
XLOC_033770 BX323591.1 coding upstream 263332 28461463 ~ 28461578 (+)
XLOC_033769 BX072554.2 coding upstream 466284 28253644 ~ 28258626 (+)
XLOC_033767 tub coding upstream 535229 27898091 ~ 28189681 (+)
XLOC_033768 BX005056.1 coding upstream 811855 27912938 ~ 27913055 (+)
XLOC_033773 dok4 coding downstream 64468 28901786 ~ 28999142 (+)
XLOC_033774 CR376738.2 coding downstream 168304 29005622 ~ 29006398 (+)
XLOC_033775 CR376738.1 coding downstream 171843 29009161 ~ 29010135 (+)
XLOC_033776 dnaaf1 coding downstream 174715 29012033 ~ 29017892 (+)
XLOC_033777 cog4 coding downstream 186964 29024282 ~ 29040707 (+)
XLOC_033764 NA non-coding upstream 892587 27822444 ~ 27832323 (+)
XLOC_033780 NA non-coding downstream 224857 29062175 ~ 29064397 (+)
XLOC_033790 NA non-coding downstream 441249 29278567 ~ 29280954 (+)
XLOC_033794 NA non-coding downstream 629820 29467138 ~ 29467407 (+)
XLOC_033795 BX927082.2 non-coding downstream 665556 29502874 ~ 29506147 (+)
XLOC_033797 NA non-coding downstream 723250 29560568 ~ 29631080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_04209762_04249320 CCDC102A coding CI01000026 null 4209392 ~ 4250297 (+)