XLOC_033790


Basic Information

Item Value
gene id XLOC_033790
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 29278567 ~ 29280954 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068862
AAAACACAATCATCCCTGACCCATCCAACATTTATTAAGCCCAGAAGCCAAACACCAGTGAGTCACTACCATCAGTTACCCAACAATACACACATTATGAGGCCTTTCATCTAAAACCAGTTCGTGTAATGGACAACATGCCCGTGGGTGCCACAGTAAATAAGGTGAACACTGACCCCTATAGAACTGAAAGTGTAATACAAAAACAATGTTTCCACAATGCTTTGTGGTAATATGCAGTATAGAGAAGTAAAAAACACAGCCCGTGTTGCTGCAGAACGAACGATGAAATGTGTTGATGTCTGAGTACACAGCTTTTTTTAGCCTTCTGAATGCATTTTCTTAGAGCTGACAAACATGCCTTCAAGGGGTTTTGCTTGCTGCTAAAACTATCCACAAATTGCTATTAAGATAGTTGCGTATGAATGAAGAGCTCTGTGTGGCGCAGAAGAGAAAAACAAGTCAAATCTGCATGACAGTGTCGCTTAAGGATTCTGGTCAGTGAGTTGAGCTTGCATAACCACATCTATATGACAGCACGTGACAAAGACTGATAGATTTGGAGGGAAACTAACATAACAGGATGCAAGACCATGAGTAAATACTGTGTACCCCACAGCATGCATGTGAATTCAAAAGGACGTAAAAGTTAGTCCTTAAAAGGATACTTTGAAGAAAGGAATGCCTTCAAAGTATACAAGATTGAATGCAATGTAACGATGACCATGTATATAAATCAGAGGATTTTTTAACAAGATAGTAGCAAAGCTAGAGTTTAAATACATTACTCACCAAAATACTGCAGAACAATCATAAAGTATACGTAGCATAACCTCCTTTTAGAGTTTAGTGCATTCCAAAACAGTAGACTCAGTGAATCTAATCACTTTGCAGTAGTTCCAGTAGTGTAGTCAACTGTTTAAAAGAGTCTGATTGGTCTACAAGTTTATGTTAGAGGAAGCATCATCCCACTAAGGATAACAACTTGTGTCATGTAGACATAACAATAGGCCCATTCTGTACTTATTgaatacaatataaattaaaatagttcCTCTAAACGCCACAGCAGGCAGCCATGGAAAAAAGGGGGGAAACCCTGGAGAAGCATATTCAATCCATTAGCTGGGTTTAATCAAATAAGCTGAGTTCAGTTGTCTTTTAACCTTATGTAATCAGATCTGGTAAACAAGTAACCAAAGGTGAACACCATGTTCTGTGTACACTGTCTGAACAAATTACAGCTGATCAGGAAATAGAAAGAAAAGAGGGATACACttcattattgaaaataaaaacatcacatctgTCATCATCCTTAGTGTGAACGGCCCTTTAACCTGTGTGTTTTCCTGAAAATGGTCCTGCACACCTTAGAATATTCAAGacccaatcagaatccagcattcaacagctctttaaaataaatagctTTGTACTGCAccgaaaaaatgctgggttccacacaattctttcatgtgtTCCCAACACGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068862 True 1494 lncRNA 0.38 2 29278567 29280954

Neighbor

gene id symbol gene type direction distance location
XLOC_033789 aph1b coding upstream 91628 29176924 ~ 29186939 (+)
XLOC_033788 slc38a8b coding upstream 102360 29163762 ~ 29176207 (+)
XLOC_033787 tmppe coding upstream 116644 29153018 ~ 29161923 (+)
XLOC_033786 mtbl coding upstream 129339 29148714 ~ 29149228 (+)
XLOC_033785 gnao1b coding upstream 134020 29133321 ~ 29144547 (+)
XLOC_033791 si:ch211-112g6.4 coding downstream 12498 29293452 ~ 29298477 (+)
XLOC_033792 rab8b coding downstream 20543 29301497 ~ 29310861 (+)
XLOC_033793 foxb1b coding downstream 180106 29461060 ~ 29463253 (+)
XLOC_033794 NA coding downstream 186184 29467138 ~ 29467407 (+)
XLOC_033795 BX927082.2 coding downstream 221920 29502874 ~ 29506147 (+)
XLOC_033780 NA non-coding upstream 214170 29062175 ~ 29064397 (+)
XLOC_033770 BX323591.1 non-coding upstream 816989 28461463 ~ 28461578 (+)
XLOC_033769 BX072554.2 non-coding upstream 1019941 28253644 ~ 28258626 (+)
XLOC_033768 BX005056.1 non-coding upstream 1365512 27912938 ~ 27913055 (+)
XLOC_033765 BX005056.3 non-coding upstream 1452506 27825945 ~ 27826061 (+)
XLOC_033797 NA non-coding downstream 279614 29560568 ~ 29631080 (+)
XLOC_033798 CR388046.6 non-coding downstream 450300 29731254 ~ 29732610 (+)
XLOC_033799 CR388046.5 non-coding downstream 464952 29745906 ~ 29747262 (+)
XLOC_033764 NA non-coding upstream 1446244 27822444 ~ 27832323 (+)

Expression


Co-expression Network