XLOC_033788 (slc38a8b)


Basic Information

Item Value
gene id XLOC_033788
gene name slc38a8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 29163762 ~ 29176207 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066095
CACCACTGAAATGAACAAATACAAGATCATAGAGGAGATAAAACTGCAGAGGAGTTTATTTAGTTGGTTCGACATTATTACacatttaaatgtacaaaatttcaacaattgtAATCATTTTAACTGTTCTCAAAAAGAAGCGCCAAACAAAAGTCTATTTCTCAGGCGGAGGCGCTTTCTTCTTGACAGCCCGCGTCAGCGCTTGTTGAACCACCGGGTAGAGTTTATGACAGCCGTCCATGCAGGTTCTCATAGCCTCGGTCAGAGTGTCCTCCCGCATCTCCCCGTCCGCATTCAGGCCAGACACCTGATTCAGATTGGGAAGCAGAGCCAAGGTCTTGAGGCGCTGAGGATGGAGGAACTGGCCCGGGAGAGTATACGCAGCATCAGCCTGCTCTCAAAACCTGCGCGGGGTTCGGACGTCCCACGACTCGGCTCATTTGGGGCCATTTTCATCATGCTTAAATCTGCCCTCGGAGCGGGACTGCTCAACTTTCCGTGGGCTTTTGAGAAGGCTGGCGGCGTGAACACTGCGATCAGCGTGGAGATGgtGAGTCTGGTGTTCCTCATAAGTGGGCTGGTCATTCTTGGTTATGCCTCATCGATCAGTCGCCAGAACACGTATCATGATGTGGTGCGGAATGTGTGTGGGCGGAGGATCGGTCATCTGTGTGAGATCTGCTTTGTTTTCAACCTCTTCATGATCTCGGTGGCCTTTTTGGTGGTGGTGCAGGATCAACTAGAAAAGTtgtgtctGTCTCTGTACGAGACGGTGACTGGAAATACCGAAGCAGAGATGCCACATCACTGGTACACAGATTACCGGTTTGCCCTCTCTTTCATGTGTCTTATTATCATCCTTCCACTCTCCATACCCAAAGAGATCGGCATCCAGAAATACACCAGTGTAATGGGAACTCTGGCTGCGACTTACCTGAGTGTTGCTGTCATTGCGAAATATTAcctaaaagacacacacacagcggaccTCACACCTGAGCACAGTCAAGGATTGGGCTCATGGGCTTCCATGTTCAGTGTGGTTCCTACCATCTGCTTCGGTTTCCAGTGCCACGAAGCTTCCATTGCTATATACAGCAGCATGGAAAACAAAAAGATCACACATTGGGTTTTCATCTCAGTCACTTCTATGATTTTCTGCCTGCTTATTTATACTCTCACAGgtgtgtttggtttTCTTACATTTGGACGGAAAGTAGCCTCAGATATCCTGATGTCATATCCAGGAAATGATGTAGTGATGATTATTGCTAGGCTGCTGTTTGGAATTTCGATCGTCACCATCTATCCTATAATACTGCTGTTGGGAAGGTCAGTGATTCTAACACAAATACTGCGCTTTTGGGAACGACGGACCATAATGACACCTGTGTTTGAGGGTCGGTGCCGTCTCATTCTCACTATTCTCTGGATCACCGTGACTCTCCTCATCGCTATATTTGTGCCAGACATGAGTGAAGTCATCAGCGTAATTGGGGGAATCAGTGccttcttcatcttcatctttcCTGGGTTGTGTCTCATTTTTGTCATGCAGACAGAGCCTATAAATCACAGGATAAGaATCCTCTTGACAGGATGGGGTGTGGTGACTATCGTAATTGGAGCTTTTATCTTTGGCCAGAGCACAACCATCGCTGTTATGGAATTAGCACACAAGTTTTAATCTCCATCCTGATCATAGTCTACTGTATATTTGACTGATGAATGAGAAACAGTATGATACTTGAAACTGAGGACGCTTGTATTAATGTAGAactatttttctttatatatttattcttctgTGTAGTTTaagacaatacattttatttaaatatgctgGAATGACTTTATGTAAACCGTgtttggatgaatgaataaatgtgagaGATTTGCAATACCTTAATAAAATGTGTTACCATTTTGACT
>TCONS_00066096
ATGGAGGAACTGGCCCGGGAGAGTATACGCAGCATCAGCCTGCTCTCAAAACCTGCGCGGGGTTCGGACGTCCCACGACTCGGCTCATTTGGGGCCATTTTCATCATGCTTAAATCTGCCCTCGGAGCGGGACTGCTCAACTTTCCGTGGGCTTTTGAGAAGGCTGGCGGCGTGAACACTGCGATCAGCGTGGAGATGgtGAGTCTGGTGTTCCTCATAAGTGGGCTGGTCATTCTTGGTTATGCCTCATCGATCAGTCGCCAGAACACGTATCATGATGTGGTGCGGAATGTGTGTGGGCGGAGGATCGGTCATCTGTGTGAGATCTGCTTTGTTTTCAACCTCTTCATGATCTCGGTGGCCTTTTTGGTGGTGGTGCAGGATCAACTAGAAAAGTtgtgtctGTCTCTGTACGAGACGGTGACTGGAAATACCGAAGCAGAGATGCCACATCACTGGTACACAGATTACCGGTTTGCCCTCTCTTTCATGTGTCTTATTATCATCCTTCCACTCTCCATACCCAAAGAGATCGGCATCCAGAAATACACCAGGTGTGTTAGAGGCTATGCCATGTTATTTCTGCTGCTGTATCATTATGTCTGTTCTCTGAATATTTCTTTGTGTTCATTCATCAGTGTAATGGGAACTCTGGCTGCGACTTACCTGAGTGTTGCTGTCATTGCGAAATATTAcctaaaagacacacacacagcggaccTCACACCTGAGCACAGTCAAGGATTGGGCTCATGGGCTTCCATGTTCAGTGTGGTTCCTACCATCTGCTTCGGTTTCCAGTGCCACGAAGCTTCCATTGCTATATACAGCAGCATGGAAAACAAAAAGATCACACATTGGGTTTTCATCTCAGTCACTTCTATGATTTTCTGCCTGCTTATTTATACTCTCACAGgtgtgtttggtttTCTTACATTTGGACGGAAAGTAGCCTCAGATATCCTGATGTCATATCCAGGAAATGATGTAGTGATGATTATTGCTAGGCTGCTGTTTGGAATTTCGATCGTCACCATCTATCCTATAATACTGCTGTTGGGAAGGTCAGTGATTCTAACACAAATACTGCGCTTTTGGGAACGACGGACCATAATGACACCTGTGTTTGAGGGTCGGTGCCGTCTCATTCTCACTATTCTCTGGATCACCGTGACTCTCCTCATCGCTATATTTGTGCCAGACATGAGTGAAGTCATCAGCGTAATTGGGGGAATCAGTGccttcttcatcttcatctttcCTGGGTTGTGTCTCATTTTTGTCATGCAGACAGAGCCTATAAATCACAGGATAAGaATCCTCTTGACAGGATGGGGTGTGGTGACTATCGTAATTGGAGCTTTTATCTTTGGCCAGAGCACAACCATCGCTGTTATGGAATTAGCACACAAGTTTTAATCTCCATCCTGATCATAGTCTACTGTATATTTGACTGATGAATGAGAAACAGTATGATACTTGAAACTGAGGACGCTTGTATTAATGTAGAactatttttctttatatatttattcttctgTGTAGTTTaagacaatacattttatttaaatatgctgGAATGACTTTATGTAAACCGTgtttggatgaatgaataaatgtgagaGATTTGCAATACCTTAATAAAATGTGTTACCATTTTGACTAATTTTGAGTGAGAAATGCGTTAACATTAAAGCATTCCATGTCACAGCAGagatcgagactcatcagaccatacaacgtttttccaattcgctattgtccaattttggttagCCTgtacgaattgtagcctcagtttcctgttcttagctgacagaagtcaagtggtgctcgctgcagagccatttgaggagagctgagctccaacgagggg

Function

symbol description
slc38a8b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC38A8 (solute carrier family 38 member 8).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121005-6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC38A8 (solute carrier family 38 member 8).

Ensembl:

ensembl_id ENSDARG00000054196

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066095 False 1932 mRNA 0.45 11 29163762 29175995
TCONS_00066096 True 1876 mRNA 0.44 9 29167744 29176207

Neighbor

gene id symbol gene type direction distance location
XLOC_033787 tmppe coding upstream 1839 29153018 ~ 29161923 (+)
XLOC_033786 mtbl coding upstream 14534 29148714 ~ 29149228 (+)
XLOC_033785 gnao1b coding upstream 19215 29133321 ~ 29144547 (+)
XLOC_033784 tradd coding upstream 39184 29115890 ~ 29124578 (+)
XLOC_033783 ogfod1 coding upstream 53668 29096194 ~ 29110094 (+)
XLOC_033789 aph1b coding downstream 717 29176924 ~ 29186939 (+)
XLOC_033790 NA coding downstream 102360 29278567 ~ 29280954 (+)
XLOC_033791 si:ch211-112g6.4 coding downstream 117245 29293452 ~ 29298477 (+)
XLOC_033792 rab8b coding downstream 125290 29301497 ~ 29310861 (+)
XLOC_033793 foxb1b coding downstream 284853 29461060 ~ 29463253 (+)
XLOC_033780 NA non-coding upstream 99365 29062175 ~ 29064397 (+)
XLOC_033770 BX323591.1 non-coding upstream 702184 28461463 ~ 28461578 (+)
XLOC_033769 BX072554.2 non-coding upstream 905136 28253644 ~ 28258626 (+)
XLOC_033768 BX005056.1 non-coding upstream 1250707 27912938 ~ 27913055 (+)
XLOC_033765 BX005056.3 non-coding upstream 1337701 27825945 ~ 27826061 (+)
XLOC_033794 NA non-coding downstream 290931 29467138 ~ 29467407 (+)
XLOC_033795 BX927082.2 non-coding downstream 326667 29502874 ~ 29506147 (+)
XLOC_033797 NA non-coding downstream 384361 29560568 ~ 29631080 (+)
XLOC_033798 CR388046.6 non-coding downstream 555047 29731254 ~ 29732610 (+)

Expression


Co-expression Network