RNA id: TCONS_00068862


Basic Information

Item Value
RNA id TCONS_00068862
length 1494
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_033790
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 29278567 ~ 29280954 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACACAATCATCCCTGACCCATCCAACATTTATTAAGCCCAGAAGCCAAACACCAGTGAGTCACTACCATCAGTTACCCAACAATACACACATTATGAGGCCTTTCATCTAAAACCAGTTCGTGTAATGGACAACATGCCCGTGGGTGCCACAGTAAATAAGGTGAACACTGACCCCTATAGAACTGAAAGTGTAATACAAAAACAATGTTTCCACAATGCTTTGTGGTAATATGCAGTATAGAGAAGTAAAAAACACAGCCCGTGTTGCTGCAGAACGAACGATGAAATGTGTTGATGTCTGAGTACACAGCTTTTTTTAGCCTTCTGAATGCATTTTCTTAGAGCTGACAAACATGCCTTCAAGGGGTTTTGCTTGCTGCTAAAACTATCCACAAATTGCTATTAAGATAGTTGCGTATGAATGAAGAGCTCTGTGTGGCGCAGAAGAGAAAAACAAGTCAAATCTGCATGACAGTGTCGCTTAAGGATTCTGGTCAGTGAGTTGAGCTTGCATAACCACATCTATATGACAGCACGTGACAAAGACTGATAGATTTGGAGGGAAACTAACATAACAGGATGCAAGACCATGAGTAAATACTGTGTACCCCACAGCATGCATGTGAATTCAAAAGGACGTAAAAGTTAGTCCTTAAAAGGATACTTTGAAGAAAGGAATGCCTTCAAAGTATACAAGATTGAATGCAATGTAACGATGACCATGTATATAAATCAGAGGATTTTTTAACAAGATAGTAGCAAAGCTAGAGTTTAAATACATTACTCACCAAAATACTGCAGAACAATCATAAAGTATACGTAGCATAACCTCCTTTTAGAGTTTAGTGCATTCCAAAACAGTAGACTCAGTGAATCTAATCACTTTGCAGTAGTTCCAGTAGTGTAGTCAACTGTTTAAAAGAGTCTGATTGGTCTACAAGTTTATGTTAGAGGAAGCATCATCCCACTAAGGATAACAACTTGTGTCATGTAGACATAACAATAGGCCCATTCTGTACTTATTgaatacaatataaattaaaatagttcCTCTAAACGCCACAGCAGGCAGCCATGGAAAAAAGGGGGGAAACCCTGGAGAAGCATATTCAATCCATTAGCTGGGTTTAATCAAATAAGCTGAGTTCAGTTGTCTTTTAACCTTATGTAATCAGATCTGGTAAACAAGTAACCAAAGGTGAACACCATGTTCTGTGTACACTGTCTGAACAAATTACAGCTGATCAGGAAATAGAAAGAAAAGAGGGATACACttcattattgaaaataaaaacatcacatctgTCATCATCCTTAGTGTGAACGGCCCTTTAACCTGTGTGTTTTCCTGAAAATGGTCCTGCACACCTTAGAATATTCAAGacccaatcagaatccagcattcaacagctctttaaaataaatagctTTGTACTGCAccgaaaaaatgctgggttccacacaattctttcatgtgtTCCCAACACGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066099 lncRNA upstream 95840 29182076 ~ 29182727 (+) True XLOC_033789
TCONS_00066088 lncRNA upstream 187630 29085562 ~ 29090937 (+) True XLOC_033782
TCONS_00068576 lncRNA upstream 214170 29062175 ~ 29064397 (+) True XLOC_033780
TCONS_00066064 lncRNA upstream 1088886 28058202 ~ 28189681 (+) True XLOC_033767
TCONS_00068575 lncRNA upstream 1189550 28058202 ~ 28089017 (+) False XLOC_033767
TCONS_00068577 lncRNA downstream 180411 29461365 ~ 29462263 (+) True XLOC_033793
TCONS_00068578 lncRNA downstream 186184 29467138 ~ 29467407 (+) True XLOC_033794
TCONS_00068863 lncRNA downstream 279614 29560568 ~ 29631080 (+) True XLOC_033797
TCONS_00068864 lncRNA downstream 791924 30072878 ~ 30076172 (+) True XLOC_033813
TCONS_00068865 lncRNA downstream 813855 30094809 ~ 30117108 (+) True XLOC_033814
TCONS_00066098 mRNA upstream 91628 29177191 ~ 29186939 (+) False XLOC_033789
TCONS_00066096 mRNA upstream 102360 29167744 ~ 29176207 (+) True XLOC_033788
TCONS_00066095 mRNA upstream 102572 29163762 ~ 29175995 (+) False XLOC_033788
TCONS_00066094 mRNA upstream 116644 29153018 ~ 29161923 (+) True XLOC_033787
TCONS_00066093 mRNA upstream 129339 29148714 ~ 29149228 (+) True XLOC_033786
TCONS_00066100 mRNA downstream 12498 29293452 ~ 29298477 (+) True XLOC_033791
TCONS_00066101 mRNA downstream 20543 29301497 ~ 29310861 (+) True XLOC_033792
TCONS_00066102 mRNA downstream 180106 29461060 ~ 29463253 (+) False XLOC_033793
TCONS_00066106 mRNA downstream 228301 29509255 ~ 29515429 (+) False XLOC_033796
TCONS_00066107 mRNA downstream 231719 29512673 ~ 29515727 (+) False XLOC_033796
TCONS_00066097 other upstream 95823 29176924 ~ 29182744 (+) False XLOC_033789
TCONS_00066092 other upstream 138124 29133404 ~ 29140443 (+) True XLOC_033785
TCONS_00066080 other upstream 263399 29014139 ~ 29015168 (+) True XLOC_033776
TCONS_00066070 other upstream 545047 28724910 ~ 28733520 (+) False XLOC_033772
TCONS_00066067 other upstream 816989 28461463 ~ 28461578 (+) True XLOC_033770
TCONS_00066103 other downstream 221920 29502874 ~ 29506131 (+) False XLOC_033795
TCONS_00066104 other downstream 222277 29503231 ~ 29505187 (+) False XLOC_033795
TCONS_00066105 other downstream 222601 29503555 ~ 29506147 (+) True XLOC_033795
TCONS_00066109 other downstream 450300 29731254 ~ 29732610 (+) True XLOC_033798
TCONS_00066110 other downstream 464952 29745906 ~ 29747262 (+) True XLOC_033799