Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00066080 |
| length | 604 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.47 |
| exon number | 5 |
| gene id | XLOC_033776 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 29012033 ~ 29017892 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048793 | pronephros development | biological_process |
| GO:0003143 | embryonic heart tube morphogenesis | biological_process |
| GO:0003146 | heart jogging | biological_process |
| GO:0044458 | motile cilium assembly | biological_process |
| GO:0007283 | spermatogenesis | biological_process |
| GO:0035082 | axoneme assembly | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0007369 | gastrulation | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0003305 | cell migration involved in heart jogging | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0003314 | heart rudiment morphogenesis | biological_process |
| GO:0061371 | determination of heart left/right asymmetry | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0005929 | cilium | cellular_component |
| GO:0005930 | axoneme | cellular_component |
| GO:0070840 | dynein complex binding | molecular_function |
| id | description |
|---|---|
| ko04812 | Cytoskeleton proteins |
| id | description |
|---|---|
| ZDB-GENE-031114-4 | Enables dynein complex binding activity. Acts upstream of or within several processes, including axoneme assembly; convergent extension involved in gastrulation; and embryonic heart tube development. Predicted to be located in axoneme. Is expressed in several structures, including chordo neural hinge; forerunner cell group; intermediate mesoderm; nervous system; and pronephric duct. Used to study autosomal dominant polycystic kidney disease; seminoma; and testicular germ cell cancer. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 13. Orthologous to human DNAAF1 (dynein axonemal assembly factor 1). |
| ensembl_id | ENSDART00000173853 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00066064 | lncRNA | upstream | 824458 | 28058202 ~ 28189681 (+) | True | XLOC_033767 |
| TCONS_00068575 | lncRNA | upstream | 925122 | 28058202 ~ 28089017 (+) | False | XLOC_033767 |
| TCONS_00068859 | lncRNA | upstream | 1181816 | 27823531 ~ 27832323 (+) | False | XLOC_033764 |
| TCONS_00068576 | lncRNA | downstream | 47007 | 29062175 ~ 29064397 (+) | True | XLOC_033780 |
| TCONS_00066088 | lncRNA | downstream | 70394 | 29085562 ~ 29090937 (+) | True | XLOC_033782 |
| TCONS_00066099 | lncRNA | downstream | 166908 | 29182076 ~ 29182727 (+) | True | XLOC_033789 |
| TCONS_00068862 | lncRNA | downstream | 263399 | 29278567 ~ 29280954 (+) | True | XLOC_033790 |
| TCONS_00068577 | lncRNA | downstream | 446197 | 29461365 ~ 29462263 (+) | True | XLOC_033793 |
| TCONS_00066078 | mRNA | upstream | 255 | 29012033 ~ 29013884 (+) | False | XLOC_033776 |
| TCONS_00066077 | mRNA | upstream | 4004 | 29009161 ~ 29010135 (+) | True | XLOC_033775 |
| TCONS_00066076 | mRNA | upstream | 7741 | 29005622 ~ 29006398 (+) | True | XLOC_033774 |
| TCONS_00066072 | mRNA | upstream | 14997 | 28901786 ~ 28999142 (+) | False | XLOC_033773 |
| TCONS_00066075 | mRNA | upstream | 20221 | 28960518 ~ 28993918 (+) | True | XLOC_033773 |
| TCONS_00066081 | mRNA | downstream | 9114 | 29024282 ~ 29040707 (+) | True | XLOC_033777 |
| TCONS_00066082 | mRNA | downstream | 29720 | 29044888 ~ 29052468 (+) | True | XLOC_033778 |
| TCONS_00066083 | mRNA | downstream | 38049 | 29053217 ~ 29061639 (+) | False | XLOC_033779 |
| TCONS_00066084 | mRNA | downstream | 38071 | 29053239 ~ 29062157 (+) | True | XLOC_033779 |
| TCONS_00066085 | mRNA | downstream | 50747 | 29065915 ~ 29080556 (+) | True | XLOC_033781 |
| TCONS_00066070 | other | upstream | 280619 | 28724910 ~ 28733520 (+) | False | XLOC_033772 |
| TCONS_00066067 | other | upstream | 552561 | 28461463 ~ 28461578 (+) | True | XLOC_033770 |
| TCONS_00066066 | other | upstream | 755513 | 28255096 ~ 28258626 (+) | True | XLOC_033769 |
| TCONS_00066065 | other | upstream | 758962 | 28253644 ~ 28255177 (+) | False | XLOC_033769 |
| TCONS_00066060 | other | upstream | 1101084 | 27912938 ~ 27913055 (+) | True | XLOC_033768 |
| TCONS_00066092 | other | downstream | 118236 | 29133404 ~ 29140443 (+) | True | XLOC_033785 |
| TCONS_00066097 | other | downstream | 161756 | 29176924 ~ 29182744 (+) | False | XLOC_033789 |
| TCONS_00066103 | other | downstream | 487706 | 29502874 ~ 29506131 (+) | False | XLOC_033795 |
| TCONS_00066104 | other | downstream | 488063 | 29503231 ~ 29505187 (+) | False | XLOC_033795 |
| TCONS_00066105 | other | downstream | 488387 | 29503555 ~ 29506147 (+) | True | XLOC_033795 |
