RNA id: TCONS_00068576


Basic Information

Item Value
RNA id TCONS_00068576
length 548
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id XLOC_033780
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 29062175 ~ 29064397 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGATGTTTTACTAACAAAATGGAAGTCCTTGTAAGTCATGCCTAATTTATAAGAAAATagattttgtaaaatgtaataaggGTGAAATGTTAAATGCTGTTTGCATTAACAGCCAAAATAATCACATAATAGATTAAAAAGACTGAAAAATGATCCATAAAGATGCAAAAGGGTGAAAGTGATAGCTTACCTAAAAATGATGTCAGAACTTTTCATTTCTGAGTGAAGTATCCCCTTAAGTGAAAGGAAAAGATGCGCGTCCGGTGAATTCTGGGCCTCCTTGCTTGCCATAAAACGCGATTTCCGTTAGCCATTATCAAAACACTTTTggttattcattttttatgtatttttggtaTTACAGACAATATTTGGGCATTAGATAAAGGGACAGAAATGGACACTTCTCTGGACATTGTGAAGAGAGATAACATTCTTCAATCTGAACACCATTCTAAAGAGTTTTCCAACAACTTCTCGAAAGTTTCTTCGTGCTGCTTTacgagaaaaaaaatgaatgatgaacATAAACTCAACAGGTTGGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066064 lncRNA upstream 872494 28058202 ~ 28189681 (+) True XLOC_033767
TCONS_00068575 lncRNA upstream 973158 28058202 ~ 28089017 (+) False XLOC_033767
TCONS_00068858 lncRNA upstream 1229852 27822444 ~ 27832323 (+) False XLOC_033764
TCONS_00068859 lncRNA upstream 1229852 27823531 ~ 27832323 (+) False XLOC_033764
TCONS_00068860 lncRNA upstream 1229852 27825631 ~ 27832323 (+) False XLOC_033764
TCONS_00066088 lncRNA downstream 21165 29085562 ~ 29090937 (+) True XLOC_033782
TCONS_00066099 lncRNA downstream 117679 29182076 ~ 29182727 (+) True XLOC_033789
TCONS_00068862 lncRNA downstream 214170 29278567 ~ 29280954 (+) True XLOC_033790
TCONS_00068577 lncRNA downstream 396968 29461365 ~ 29462263 (+) True XLOC_033793
TCONS_00068578 lncRNA downstream 402741 29467138 ~ 29467407 (+) True XLOC_033794
TCONS_00066084 mRNA upstream 18 29053239 ~ 29062157 (+) True XLOC_033779
TCONS_00066083 mRNA upstream 536 29053217 ~ 29061639 (+) False XLOC_033779
TCONS_00066082 mRNA upstream 9707 29044888 ~ 29052468 (+) True XLOC_033778
TCONS_00066081 mRNA upstream 21468 29024282 ~ 29040707 (+) True XLOC_033777
TCONS_00066079 mRNA upstream 44283 29012044 ~ 29017892 (+) False XLOC_033776
TCONS_00066085 mRNA downstream 1518 29065915 ~ 29080556 (+) True XLOC_033781
TCONS_00066086 mRNA downstream 16287 29080684 ~ 29094305 (+) False XLOC_033782
TCONS_00066087 mRNA downstream 16355 29080752 ~ 29093829 (+) False XLOC_033782
TCONS_00066089 mRNA downstream 31797 29096194 ~ 29110094 (+) True XLOC_033783
TCONS_00066090 mRNA downstream 51493 29115890 ~ 29124578 (+) True XLOC_033784
TCONS_00066080 other upstream 47007 29014139 ~ 29015168 (+) True XLOC_033776
TCONS_00066070 other upstream 328655 28724910 ~ 28733520 (+) False XLOC_033772
TCONS_00066067 other upstream 600597 28461463 ~ 28461578 (+) True XLOC_033770
TCONS_00066066 other upstream 803549 28255096 ~ 28258626 (+) True XLOC_033769
TCONS_00066065 other upstream 806998 28253644 ~ 28255177 (+) False XLOC_033769
TCONS_00066092 other downstream 69007 29133404 ~ 29140443 (+) True XLOC_033785
TCONS_00066097 other downstream 112527 29176924 ~ 29182744 (+) False XLOC_033789
TCONS_00066103 other downstream 438477 29502874 ~ 29506131 (+) False XLOC_033795
TCONS_00066104 other downstream 438834 29503231 ~ 29505187 (+) False XLOC_033795
TCONS_00066105 other downstream 439158 29503555 ~ 29506147 (+) True XLOC_033795

Expression Profile

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