RNA id: TCONS_00066079


Basic Information

Item Value
RNA id TCONS_00066079
length 2594
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_033776
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 29012033 ~ 29017892 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTTCAGGCAAACTCGTAAGCTACAGTTGATTGCGGGACACATTCGTGAGTTTCTTCAGTTCTAattaatgttgtattttaatatcACTGCgaaatgaagacaaaaatgatCGTATCCACATCGATGAACGCGGGAGAAGGAACAAGAACTGAGGCTGAAGACACTAGTAAAGGTGTTGCGTCTTTAGCAGATCTGGATTCTCAGAGTGCAGCTGCTGAAGTGTCAGAGAGTGACATAAAGCCTTCAGGCCCCAGAATTACCAAAGACTTCTTAAGGGAGCACTGCAAGAAAAACAAACTGTACCTGACACCAAGGCTGAATGACACACTTTATCTTCACTTTAAAGGTTTTTCTTGTATAGAGGGTTTGGAAGAATATACTGGCCTGCGCTGCCTATGGCTCGAGTGTAATGGTATTCGAAAGATTGAAAATCTGGAGAATCAGACAGAGCTTCGCTGTCTGTTCCTCCATCAGAATCTCATTCACACTCTGGAAAACCTGGAACCACTCAGCAAGCTTTGCACGCTTAATGTCTCAAACAATTATATCAAGGTCATTGAGAACATTTCTAGTTTGAGCGACTTgtccactctacagatctctcaTAACACACTGGAGAATGTTTGTGACATGGAGGAGCTTTCACACTGTCCATCCATCAGTGTCCTTGATCTGTCCCACAACCGCATCAGTGATCCAGCGCTAGTTAATATTCTAGAGAAAATGCCTGACTTGCGGGTGTTAAATCTAATGGGCAATGAAGTCATCAAAAAAATCCCAAACTACAGGAAGACTCTGATTGTGCGTCTGAAGCAGCTGACCTATCTAGATGATCGGCCTGTTTTTCCAAAAGATAGAGCATGTGCCGAGGCCTGGGCAGCTGGTGGTTTGGAAGGTGAGCAAAAAGAAAGGGAAATGTGGCAAACAAGAGAGAGAAGGAAGATCCAGGAAAGTTTGGATGCAATGACTGCCATTCGAGAGACTGCTCTGAAACGGCGGCAGGACCGAGAGCTTTCAGAGAAAGGAATTCTAGAGTTTCCAAGTCCAGTTGCTGAGGACCAGAGCCCACATGATGAAATATCAGATATTGAACCTGCAGAGAGTGACTCAGATAGTGAAACAACACAAGAACAAACTGATGCATCTCCATCGCCATCAGAGATGGACCACAATTTCAACTCTGCATCTGATGAAGATCAGATTattcaaaaaacacaaaatgattcAGACCAGTCACAACCACAACCGAATGAAAGTGTTCATTCATCATTTGACGAGGAACAGATTCGCCAATCAGCAACATGGGGACTGAAGCCTAAAGAGGAGAAGAATCAAATTTTGAGCATCTACACAAAACAATCACCGTCTGATCAGAGAGTTTTAATCTCAGTCTCAGGTCCCGGTGCTCTTGTCACTGAACTGATCTCTGAAGACGAAATAGAGTCTATCAACCTTTCAGATGAACCTGTATTAACAATTGATGATCTTCCAGATCTTGAGGATGAAGAAAATAGCCACATACTACCAATAACATCACAGAGTGGGATGCGTCCAAAGATTGAGGTGATCTCCAGCATTGACACAGAGTCAGAAGCTGTTAGGAGTTTGTATCCCTGGCCTCATTCAGACGCTGTGGCCCTTGACCAATCTCAGCAGCTTATCAGTGTCTCCACTACAAGAAACTCAGTCAAACAGTCTGGCATCAGTCTGGCAGAGGCAGGAGATGACGTCCCAAAGgcagcagaaaaaagaaagactGTTCTGATTGAGGAACTGGACTGAGTCTTTATGATTGAACGGAATGGATTAAACTATATTGCGTCTGATGGCCTTTCAGCACaaacattaaatttaaaacaaatgggACGTCTACCATATAgataatttgattaaaattattttaatcattttaataaaatgttaaaataaattactttgcTTTGAATTTTATTGCAGATATTGTACATTTGAAATACCATGTATACAGTTTTACCTGATCTTTTTACACAAtctacaaatatttaaaagtgtACAACGTTTTTCATTACtgttttttatagaaaaaaaatagttttcaaataAGCAAACACATAATTAGTCTCACCACATCTCTTTCATGTAAACTCACACACTAAATTAAAGAACATATTCAAAGAAAAAGAGTCTATGCAGATGTGTGCCTGTAGACCCGACATTGCCGTCAGTTCGGATTTGTGTGGATCAGTTAGATCCGAAACAGTAGGAGAAGAGAGCAGCATATCAGGAGCAGGTCTTTGCTGACAGAATGAGCGAGTGCTTTGAGGGTTTCCTGATTGGTTTGATCAGTGTTGGGAACCAGGGGTGTGGTTGCAGACACAGCTTCAGTACGACTGGCACATATATCATAGAGGTTCCCTGCAAATGCGGTTTTCCGGGACTCTGCCCTCAAAGACTCCCAGATTTCTGCTGCATCGCCACGACAACCTGACAACACTCCACTAACACACACCTGGAAGGCGTCCCATGACCTGTGGATATGAAAGTGCAATGTAATAAGATAATGAGATGAATCTGTATTCAATAAAGACGTGTTTTTCATGTGTCTCACTTGC

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0003146 heart jogging biological_process
GO:0044458 motile cilium assembly biological_process
GO:0007283 spermatogenesis biological_process
GO:0035082 axoneme assembly biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:0060271 cilium assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0003305 cell migration involved in heart jogging biological_process
GO:0001947 heart looping biological_process
GO:0003314 heart rudiment morphogenesis biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0042995 cell projection cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component
GO:0070840 dynein complex binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-031114-4 Enables dynein complex binding activity. Acts upstream of or within several processes, including axoneme assembly; convergent extension involved in gastrulation; and embryonic heart tube development. Predicted to be located in axoneme. Is expressed in several structures, including chordo neural hinge; forerunner cell group; intermediate mesoderm; nervous system; and pronephric duct. Used to study autosomal dominant polycystic kidney disease; seminoma; and testicular germ cell cancer. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 13. Orthologous to human DNAAF1 (dynein axonemal assembly factor 1).

Ensembl:

ensembl_id ENSDART00000145762

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066064 lncRNA upstream 822363 28058202 ~ 28189681 (+) True XLOC_033767
TCONS_00068575 lncRNA upstream 923027 28058202 ~ 28089017 (+) False XLOC_033767
TCONS_00068859 lncRNA upstream 1179721 27823531 ~ 27832323 (+) False XLOC_033764
TCONS_00068576 lncRNA downstream 44283 29062175 ~ 29064397 (+) True XLOC_033780
TCONS_00066088 lncRNA downstream 67670 29085562 ~ 29090937 (+) True XLOC_033782
TCONS_00066099 lncRNA downstream 164184 29182076 ~ 29182727 (+) True XLOC_033789
TCONS_00068862 lncRNA downstream 260675 29278567 ~ 29280954 (+) True XLOC_033790
TCONS_00068577 lncRNA downstream 443473 29461365 ~ 29462263 (+) True XLOC_033793
TCONS_00066077 mRNA upstream 1909 29009161 ~ 29010135 (+) True XLOC_033775
TCONS_00066076 mRNA upstream 5646 29005622 ~ 29006398 (+) True XLOC_033774
TCONS_00066075 mRNA upstream 18126 28960518 ~ 28993918 (+) True XLOC_033773
TCONS_00066074 mRNA upstream 18460 28960518 ~ 28993584 (+) False XLOC_033773
TCONS_00066073 mRNA upstream 22185 28960518 ~ 28989859 (+) False XLOC_033773
TCONS_00066081 mRNA downstream 6390 29024282 ~ 29040707 (+) True XLOC_033777
TCONS_00066082 mRNA downstream 26996 29044888 ~ 29052468 (+) True XLOC_033778
TCONS_00066083 mRNA downstream 35325 29053217 ~ 29061639 (+) False XLOC_033779
TCONS_00066084 mRNA downstream 35347 29053239 ~ 29062157 (+) True XLOC_033779
TCONS_00066085 mRNA downstream 48023 29065915 ~ 29080556 (+) True XLOC_033781
TCONS_00066070 other upstream 278524 28724910 ~ 28733520 (+) False XLOC_033772
TCONS_00066067 other upstream 550466 28461463 ~ 28461578 (+) True XLOC_033770
TCONS_00066066 other upstream 753418 28255096 ~ 28258626 (+) True XLOC_033769
TCONS_00066065 other upstream 756867 28253644 ~ 28255177 (+) False XLOC_033769
TCONS_00066060 other upstream 1098989 27912938 ~ 27913055 (+) True XLOC_033768
TCONS_00066092 other downstream 115512 29133404 ~ 29140443 (+) True XLOC_033785
TCONS_00066097 other downstream 159032 29176924 ~ 29182744 (+) False XLOC_033789
TCONS_00066103 other downstream 484982 29502874 ~ 29506131 (+) False XLOC_033795
TCONS_00066104 other downstream 485339 29503231 ~ 29505187 (+) False XLOC_033795
TCONS_00066105 other downstream 485663 29503555 ~ 29506147 (+) True XLOC_033795

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_04333601_04341386.mRNA True 1641 mRNA 0.44 8 CI01000026 4333601 ~ 4341491 (+)