RNA id: TCONS_00066109



Basic Information


Item Value
RNA id TCONS_00066109
length 726
RNA type unprocessed_pseudogene
GC content 0.48
exon number 4
gene id XLOC_033798
representative True

Chromosome Information


Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 29731254 ~ 29732610 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTACAACATGGGTGAGCTACTGGGAGAAGGAGGATTTGGTGCCGTATATGCTGGTGTCCGTGCCCATGATGATCTTCCGgtaaatttacatatatttttgcaTGATCAACCTAACAAACTATGTTTATGTGTTATGCTTTGTCTTTTCTCACCCAACATAATCGATCTGCTGGATTGGCAGGACTTTCCAGACTATTATATAATGGTCCTGCAGCGCCCTTCACCATGCCTGAGTGTGTTCAAGCTGTTGGAGAGCTGTGGCAACATCTTTGAAGAAAGGTTTGCTCGGTATGTGATGCGCCAGGTTATCGAGGCAGCTGAGACCTGCTGCCGGCGCGGAGTATTCCACAGAGATATAAAGTTGGAGAACTTGATCATCAACACACACACCATGGATGTCACACTGATTGACTTCGGCTGTGGGAACCTGTTCCATGAAACAGAGTACCACACTTTTAGTGGCACAGAGATGTACTGCCCTCCGGAATTTTTCGAAACGGGCAAATACTTTGCACGGCCAGCAACCGTGTATTCGCTTGGAGTGCTGCTATACACTATGGTGTGCGGTTACATGCCAGACCACACGGATCGGGAAAAGATGCAGCACTGGCTCTGGTATCTGCCGTCCTTGTCCTGTGAATGCAGTCATCTCATAAATGCCTGTCTGCATCCCGATCCCAGCGAGAGGATACAACTGGAGCAGATTCTCCTCCACGACTGGTTTAC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000173623

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00068863 lncRNA upstream 100174 29560568 ~ 29631080 (+) True XLOC_033797
TCONS_00068578 lncRNA upstream 263847 29467138 ~ 29467407 (+) True XLOC_033794
TCONS_00068577 lncRNA upstream 268991 29461365 ~ 29462263 (+) True XLOC_033793
TCONS_00068862 lncRNA upstream 450300 29278567 ~ 29280954 (+) True XLOC_033790
TCONS_00066099 lncRNA upstream 548527 29182076 ~ 29182727 (+) True XLOC_033789
TCONS_00068864 lncRNA downstream 340268 30072878 ~ 30076172 (+) True XLOC_033813
TCONS_00068865 lncRNA downstream 362199 30094809 ~ 30117108 (+) True XLOC_033814
TCONS_00066146 lncRNA downstream 660049 30392659 ~ 30399163 (+) False XLOC_033820
TCONS_00068866 lncRNA downstream 664137 30396747 ~ 30399163 (+) True XLOC_033820
TCONS_00066152 lncRNA downstream 893877 30626487 ~ 30627444 (+) True XLOC_033824
TCONS_00066107 mRNA upstream 215527 29512673 ~ 29515727 (+) False XLOC_033796
TCONS_00066106 mRNA upstream 215825 29509255 ~ 29515429 (+) False XLOC_033796
TCONS_00066108 mRNA upstream 215825 29513161 ~ 29515429 (+) True XLOC_033796
TCONS_00066102 mRNA upstream 268001 29461060 ~ 29463253 (+) False XLOC_033793
TCONS_00066101 mRNA upstream 420393 29301497 ~ 29310861 (+) True XLOC_033792
TCONS_00066118 mRNA downstream 130938 29863548 ~ 29946044 (+) False XLOC_033807
TCONS_00066119 mRNA downstream 130962 29863572 ~ 29890865 (+) False XLOC_033807
TCONS_00066120 mRNA downstream 157682 29890292 ~ 29890750 (+) False XLOC_033807
TCONS_00066121 mRNA downstream 157693 29890303 ~ 29944362 (+) True XLOC_033807
TCONS_00066123 mRNA downstream 219387 29951997 ~ 29962080 (+) False XLOC_033809
TCONS_00066105 other upstream 225107 29503555 ~ 29506147 (+) True XLOC_033795
TCONS_00066103 other upstream 225123 29502874 ~ 29506131 (+) False XLOC_033795
TCONS_00066104 other upstream 226067 29503231 ~ 29505187 (+) False XLOC_033795
TCONS_00066097 other upstream 548510 29176924 ~ 29182744 (+) False XLOC_033789
TCONS_00066092 other upstream 590811 29133404 ~ 29140443 (+) True XLOC_033785
TCONS_00066110 other downstream 13296 29745906 ~ 29747262 (+) True XLOC_033799
TCONS_00066111 other downstream 25164 29757774 ~ 29759130 (+) True XLOC_033800
TCONS_00066112 other downstream 40179 29772789 ~ 29774142 (+) True XLOC_033801
TCONS_00066113 other downstream 60156 29792766 ~ 29794119 (+) True XLOC_033802
TCONS_00066114 other downstream 73740 29806350 ~ 29807703 (+) True XLOC_033803

Expression Profile


//