XLOC_033820 (lipca)


Basic Information

Item Value
gene id XLOC_033820
gene name lipca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 30392613 ~ 30406629 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066145
TTTGGACCATCTGAATATTTACTGACCCCTCCTCTCAGACAAGTTCAATAACTTGTCCACCACCTGGCTCTATGTGCTCTTTTCTTACCCAAGAAAAAGAGTGAGAGGAAATATTGGGCTTATCTTTTGGGGCTTCAGATGTGACTTTAACATGAAGACTCTTATTAAAATAGTCTCGTGCTTTCTGATGATCTCACAGCTCACTGATGGAGCAACGTTTCAGGGAAATCGAGCAGACACTGAGCCTGAAGCCAAGATGAAGATGCGATATGAACCTAAATCAGTCTTCAGGGTTTACACTGATGGAGAATACATAGAGGATACATGCGCACTGGAGCTCTTCCAGCCTCACACACTGGACGCCTGTGGCTTCAACAGCAGCCTTCCTCTCGCTATCATCATTCATGGCTGGTCGGTAGACGGAATGATGGAGAAATGGATTTCTCGGCTGGCATCAGCACTGAAGAGCTCAGAGGGAAACATCAATGTGCTGATTGCAGATTGGCTGACTCTGGCACACCAGCACTATCCTATAGCAGCGCAGAACACACGAATAGTGGGACAGGACATTGCCCACCTGCTGAGCTGGCTAGAGGATTTCAAACAATTTCCTCTgggaaaagttcatttgattggcTACAGTCTTGGAGCTCATATATCTGGATTTGCTGGGAGTAACCTAGCTATGTCTGGGAGAACCCTGGGAAGAATTACTGGTTTGGATCCTGCCGGTCCGATGTTTGAGGGAATGTCTCATACTGACAGACTCTCACCGGAAGATGCTAAGTTTGTGGATGCCATCCATACATTTACCCTGCAGCGCATGGGACTCAGTGTGGGCATCAAACAGCCTGTGGCCCACTTTGATTTCTACCCCAATGGAGGATCATTTCAACCCGGATGCCAGCTGCACATGCAGAACATTTATGCACATTTAGCTCAGCACGGGATAATGGGATTCGAGCAGACGGTCAAGTGTGCCCATGAGCGCGCCGTGCATCTCTTCATTGACTCCCTGTTGAACAAAGACAAGCAGATAATGGCCTACAAGTGCAGCGACAACACCGCTTTCGATAAAGGCAACTGTCTGGACTGCCGAAAGAATCGCTGCAACACTTTGGGTTATGACATCAAGAAAGTGCGCACTGGCAAAAGCAAGAGGCTGTTTCTCAAAACCCGTTCACACATGCCATACAAATTGTTCCACTATCAGTTCAGGATCCAGTTCATCAACCAGATTGATAAGATCGATCCCACTCTCACAGTCTCTCTAACCGGGACACTTGGAGAGAGTGAAAATCTCCCCATAACACTTGTCGAGGAGATTTCAGGTAACAAGACCTTCACGTTGCTCATCACTCTGGATACAGACATCGGTGACCTGATGATAATGCGCTTCACGTGGGAAGGAAACCCAGTGTGGGCAAACATGTGGAACACAGTTAAGACCATCATACCCTGGGGCAAAAAGAGCAAAGGACCGCAGCTTACTTTTGGGAAGATTACCGTGAAATCTGGAGAGAGCCAGAGGAAAACAACGTTTTGTCCTCAGACAGACGAAGGCTTGAGCATCGAGATGTTGCAGGAGAAAGTGTTCGTGCGCTGTGAAAAACAGAAACCGGGGGGGATAAAACACACTCACCTCAGACACTTTCACATCCAGTCGGACTTGTCTTTTTGGATGGGGGACAGCTGAATTTCCTGTAATATAGCCTATATGCTTCGTGTTTTTACttttgtattgtttaaaaaattaaagaatggTCAAATTTATAAGGATTGTTAAACATGCAAAATAAGACGATAATGACTTCTACACCACGCCACTTCGACTCAAATTACCGCCTCGAACGTAAATACACTTTTTGATTGGCTAAAAAGGATGGGTATCTTATGGGTATTTTTGATTTGCATCAGTAATTT
>TCONS_00066146
AATAACTTGTCCACCACCTGGCTCTATGTGCTCTTTTCTTACCCAAGAAAAAGAGTGAGAGGAAATATTGGGCTTATCTTTTGGGGCTTCAGATGTGACTTTAACATGAAGACTCTTATTAAAATAGTCTCGTGCTTTCTGATGATCTCACAGCTCACTGATGGAGCAACGTTTCAGGGAAATCGAGCAGACACTGAGCCTGAAGCCAAGATGAAGATGCGATATGAACCTAAATCAGTCTTCAGGGTTTACACTGATGGAGAATACATAGAGGATACATGCGCACTGGAGCTCTTCCAGCCTCACACACTGGACGCCTGTGGCTTCAACAGCAGCCTTCCTCTCGCTATCATCATTCATGGCTGGTCGGTATGTTGAGTTCATTGATCTAATAGAAAAACAGATCAATGGTTCAAACGAACAAAAGGTCACAGAGACCTTGGCACGGACTGCAAACAGCTAAGCAAAGTTATTTCACATCTGATAAAGGCAAAATTGATTTGACAAAAGTGCCTTAGCTGTGATTCAGCAGAAGGCTCACTAAAACAAAAAACGAAATGACAAATCCTCCACCCCTGTCCCGCAGGTAGACGGAATGATGGAGAAATGGATTTCTCGGCTGGCATCAGCACTGAAGAGCTCAGAGGGAAACATCAATGTGCTGATTGCAGATTGGCTGACTCTGGCACACCAGCACTATCCTATAGCAGCGCAGAACACACGAATAGTGGGACAGGACATTGCCCACCTGCTGAGCTGGCTAGAGGATTTCAAACAATTTCCTCTgggaaaagttcatttgattggcTACAGTCTTGGAGCTCATATATCTGGATTTGCTGGGAGTAACCTAGCTATGTCTGGGAGAACCCTGGGAAGAATTACTGGTTTGGATCCTGCCGGTCCGATGTTTGAGGGAATGTCTCATACTGACAGACTCTCACCGGAAGATGCTAAGTTTGTGGATGCCATCCATACATTTACCCTGCAGCGCATGGGACTCAGTGTGGGCATCAAACAGCCTGTGGCCCACTTTGATTTCTACCCCAATGGAGGATCATTTCAACCCGGATGCCAGCTGCACATGCAGAACATTTATGCACATTTAGCTCAGCACGGGATAATGG
>TCONS_00068866
AAAGTGCCTTAGCTGTGATTCAGCAGAAGGCTCACTAAAACAAAAAACGAAATGACAAATCCTCCACCCCTGTCCCGCAGGTAGACGGAATGATGGAGAAATGGATTTCTCGGCTGGCATCAGCACTGAAGAGCTCAGAGGGAAACATCAATGTGCTGATTGCAGATTGGCTGACTCTGGCACACCAGCACTATCCTATAGCAGCGCAGAACACACGAATAGTGGGACAGGACATTGCCCACCTGCTGAGCTGGCTAGAGGATTTCAAACAATTTCCTCTgggaaaagttcatttgattggcTACAGTCTTGGAGCTCATATATCTGGATTTGCTGGGAGTAACCTAGCTATGTCTGGGAGAACCCTGGGAAGAATTACTGGTTTGGATCCTGCCGGTCCGATGTTTGAGGGAATGTCTCATACTGACAGACTCTCACCGGAAGATGCTAAGTTTGTGGATGCCATCCATACATTTACCCTGCAGCGCATGGGACTCAGTGTGGGCATCAAACAGCCTGTGGCCCACTTTGATTTCTACCCCAATGGAGGATCATTTCAACCCGGATGCCAGCTGCACATGCAGAACATTTATGCACATTTAGCTCAGCACGGGATAATGG

Function

symbol description
lipca Predicted to enable apolipoprotein binding activity; lipoprotein lipase activity; and phospholipase activity. Acts upstream of or within response to hormone. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle. Predicted to be active in extracellular space. Is expressed in several structures, including heart; integument; lens; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; coronary artery disease; familial combined hyperlipidemia; peripheral vascular disease; and type 2 diabetes mellitus. Orthologous to human LIPC (lipase C, hepatic type).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0009725 response to hormone biological_process
GO:0019433 triglyceride catabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004465 lipoprotein lipase activity molecular_function
GO:0034185 apolipoprotein binding molecular_function
GO:0004806 triglyceride lipase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0004620 phospholipase activity molecular_function
GO:0016298 lipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1361 Predicted to enable apolipoprotein binding activity; lipoprotein lipase activity; and phospholipase activity. Acts upstream of or within response to hormone. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle. Predicted to be active in extracellular space. Is expressed in several structures, including heart; integument; lens; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; coronary artery disease; familial combined hyperlipidemia; peripheral vascular disease; and type 2 diabetes mellitus. Orthologous to human LIPC (lipase C, hepatic type).

Ensembl:

ensembl_id ENSDARG00000053476

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066145 False 1923 mRNA 0.46 9 30392613 30406629
TCONS_00066146 False 1127 lncRNA 0.46 4 30392659 30399163
TCONS_00068866 True 621 lncRNA 0.48 3 30396747 30399163

Neighbor

gene id symbol gene type direction distance location
XLOC_033819 aqp9b coding upstream 2237 30371893 ~ 30390376 (+)
XLOC_033818 polr2m coding upstream 105849 30282389 ~ 30286764 (+)
XLOC_033817 sema4bb coding upstream 125444 30240791 ~ 30267169 (+)
XLOC_033816 wdr76 coding upstream 182823 30201611 ~ 30209790 (+)
XLOC_033815 si:ch211-107o10.3 coding upstream 201256 30178253 ~ 30191357 (+)
XLOC_033821 BX957301.1 coding downstream 32276 30438905 ~ 30439021 (+)
XLOC_033822 AL935053.1 coding downstream 69207 30475836 ~ 30476382 (+)
XLOC_033823 mindy2 coding downstream 87055 30493684 ~ 30537778 (+)
XLOC_033824 ccnb2 coding downstream 219749 30626378 ~ 30631119 (+)
XLOC_033825 mtmr10 coding downstream 318844 30725473 ~ 30771147 (+)
XLOC_033814 NA non-coding upstream 275505 30094809 ~ 30117108 (+)
XLOC_033813 NA non-coding upstream 316441 30072878 ~ 30076172 (+)
XLOC_033808 BX914219.4 non-coding upstream 460974 29931525 ~ 29931639 (+)
XLOC_033806 BX914219.2 non-coding upstream 540447 29850789 ~ 29852166 (+)
XLOC_033805 BX914219.1 non-coding upstream 554874 29836386 ~ 29837739 (+)
XLOC_033836 NA non-coding downstream 1521359 31927988 ~ 31975960 (+)
XLOC_033838 NA non-coding downstream 1763570 32170199 ~ 32171758 (+)
XLOC_033840 NA non-coding downstream 2056014 32462643 ~ 32472938 (+)

Expression


Co-expression Network