XLOC_033816 (wdr76)


Basic Information

Item Value
gene id XLOC_033816
gene name wdr76
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 30201611 ~ 30209790 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066139
TACGAAACCGCTCGTACGCGGGAGTTTTCATAACAGCTTGATTTCAAAGGAAGTGTGTGTGTTGAATAACCTCGAGAGCGTAGACATGGATACagataaaagtgatttaagtttAGAGACGATGCAGCTTTTACAGGAGAGGACGCCGCCTCAGAATCCTGGAATGGACGGGTCCGTGCTTCGGACGTCTCGGCGaataaaagagaaacaaaatCAAAGGAAGAAACAAATTTTACCCCCAAAATGTCTGACCTTTAGGTCTGAGGTGAAAAGCACCAGAAGAGCCGTCAAAAGAAGGATAAGTGGcagtgaaaaagaaaaagaagttaAGAGGTCAAAAGCAGACCCTGATCATGAATCTCTTCCAGGTTATCGTGAAGGTTTGTCTGAATATCAGCTGGAGCGATTGGAGAATATCAGAAAGAACCAGGCCTTCCTCAATTCCCTGAATCTGACCGAGATTTCTGAAGCTCTGAGACCCAAGCAGAAGCCTACACAGAAAGGCCTGAAAAAAGAAAAGACCCAAGTGGAGATGCTTCCAGTTCGAAAGTCACTGCGGTTACAGAATAAGGGTCCTCAGAGTACCACTGCTACAGAATTTACCTTTCCTACAACCTATGAGCTTGAAAAAGAAGCTAAACCCCCAGGACCTATTCCACTGGACCCTATCAACTTGGACGAAGATGCCACCTTACCTGATGATTTGTTAGATGTCTGGAATGAAGTCCCGTTAGAACAAAGCACAGGAACACCAGATTTGAAATCGTACGAAAGAATGCTGAAGAAGTTATCTATTGATGACAGTCGTGTTGTGAAAGTTGTGAAAGAACGAATCTGTTGTGCAGCTTTTCACCCTTCCTCAAACTTGCTAATGGCTGCAGGAGACAAATATGGCCACCTGGGACTCTGGAGGCCGGATGCTGAATGGGGGGATGATGGTGTAGTCTGCTTTGAACCCCACTCCCGTGCTATTACTGCCTTGGCTTTCACATCTCAGCCGTGCAATCTCATCACAGCGAGTTATGATGGCTCTGCACGCAGCATGGACCTGGAGAAGGCTGTGTTTGATGAGGTGTATCGCTCATCCTCTAGCTTGAAAAGCTTTGACTTTTTGTCAAGTGACTGCTCCACCTTGCTGTTTGGTGAATGGAATGGAGACGTTGCCATTGTTGACCGTAGAACTGGGAACTCGTGTGAATCTCTTCATGCCATGACTGCAGCTCCTCTGCGCGGTGTTCATGTCCACCCTGTGCAGCAGCATTACTTTTTAGTAGCAGAGAGCAGttttgtGAACATCTATGATTTGCGccatctgaaaaaaagaaacagtCCAGCAGTGTGTGAACTGTATGGTCACAGTCGCAGTACCTCCAGTGCCTTTTTCTCCCCACTCACCGGCAGCAGAGTCCTGACCACCTGCATGGACGACTGCATCAGGGTATTTGACAGTTCGCAAATAGCTGGCAGCATTCCTGCACTAACATCAATTAGGCACAACATGCAAACAGGCCGGTGGTTGTCCAGGCTGTGTGCCGTATGGGACCCCAAGCACCAAGAATGCTTTGTGATTGGCACCATGGACAGGCCTCGTAAAATTAAGGTATATCACGAGAGCGGTCGCCTGCTCCACACTTTACAAAACACGGAGCACCTGACCACTGTGTGCTCCGTCACAGCATTCCACCCTAGCAGGAACGCTCTGCTTGGAGGCAATGCAAGTGGGCGGCTGCACATCTACACTGACTGATTTATCAACTAGAAAAGATTGATTGCTTTACCTGTTGCTTTATTTGAATGTTGCTTTTCTACTTTccttttatttacacacacacgaCACTGTTGTTTTATATCAAatatgctgttgtttatgttcCTTTAACCTGATATATGTCATATTAAAGAGTACTTGAATAATCTTA
>TCONS_00066140
GCTGTAGCGTTAGTGTTTATAAAGAAGTTATGAAATTACAGAACCTGCTGCAGCAGCTAGTGATTTTAGCGCCCCCTGTCGGACACAGCGCTCAGACACACCGCTGCTGGTTAATAAAGTTATGCgttcaaaaaaataattgtatctCTTTTTAGGAGAGGACGCCGCCTCAGAATCCTGGAATGGACGGGTCCGTGCTTCGGACGTCTCGGCGaataaaagagaaacaaaatCAAAGGAAGAAACAAATTTTACCCCCAAAATGTCTGACCTTTAGGTCTGAGGTGAAAAGCACCAGAAGAGCCGTCAAAAGAAGGATAAGTGGcagtgaaaaagaaaaagaagttaAGAGGTCAAAAGCAGACCCTGATCATGAATCTCTTCCACAGGGTTATCGTGAAGGTTTGTCTGAATATCAGCTGGAGCGATTGGAGAATATCAGAAAGAACCAGGCCTTCCTCAATTCCCTGAATCTGACCGAGATTTCTGAAGCTCTGAGACCCAAGCAGAAGCCTACACAGAAAGGCCTGAAAAAAGAAAAGACCCAAGTGGAGATGCTTCCAGTTCGAAAGTCACTGCGGTTACAGAATAAGGGTCCTCAGAGTACCACTGCTACAGAATTTACCTTTCCTACAACCTATGAGCTTGAAAAAGAAGCTAAACCCCCAGGACCTATTCCACTGGACCCTATCAACTTGGACGAAGATGCCACCTTACCTGATGATTTGTTAGATGTCTGGAATGAAGTCCCGTTAGAACAAAGCACAGGAACACCAGATTTGAAATCGTACGAAAGAATGCTGAAGAAGTTATCTATTGATGACAGTCGTGTTGTGAAAGTTGTGAAAGAACGAATCTGTTGTGCAGCTTTTCACCCTTCCTCAAACTTGCTAATGGCTGCAGGAGACAAATATGGCCACCTGGGACTCTGGAGGCCGGATGCTGAATGGGGGGA

Function

symbol description
wdr76 Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA damage checkpoint. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be active in nucleus. Orthologous to human WDR76 (WD repeat domain 76).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:2000001 regulation of DNA damage checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-4513 Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA damage checkpoint. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be active in nucleus. Orthologous to human WDR76 (WD repeat domain 76).

Ensembl:

ensembl_id ENSDARG00000053554

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066139 False 1919 mRNA 0.46 15 30201611 30209790
TCONS_00066140 True 955 mRNA 0.45 9 30202104 30204711

Neighbor

gene id symbol gene type direction distance location
XLOC_033815 si:ch211-107o10.3 coding upstream 10254 30178253 ~ 30191357 (+)
XLOC_033814 NA coding upstream 84503 30094809 ~ 30117108 (+)
XLOC_033813 NA coding upstream 125439 30072878 ~ 30076172 (+)
XLOC_033812 pstpip1b coding upstream 134383 30051488 ~ 30067228 (+)
XLOC_033811 isl2b coding upstream 204167 29992889 ~ 29997444 (+)
XLOC_033817 sema4bb coding downstream 31001 30240791 ~ 30267169 (+)
XLOC_033818 polr2m coding downstream 72599 30282389 ~ 30286764 (+)
XLOC_033819 aqp9b coding downstream 162103 30371893 ~ 30390376 (+)
XLOC_033820 lipca coding downstream 182823 30392613 ~ 30406629 (+)
XLOC_033821 BX957301.1 coding downstream 229115 30438905 ~ 30439021 (+)
XLOC_033808 BX914219.4 non-coding upstream 269972 29931525 ~ 29931639 (+)
XLOC_033806 BX914219.2 non-coding upstream 349445 29850789 ~ 29852166 (+)
XLOC_033805 BX914219.1 non-coding upstream 363872 29836386 ~ 29837739 (+)
XLOC_033822 AL935053.1 non-coding downstream 266046 30475836 ~ 30476382 (+)
XLOC_033836 NA non-coding downstream 1718198 31927988 ~ 31975960 (+)
XLOC_033838 NA non-coding downstream 1960409 32170199 ~ 32171758 (+)
XLOC_033840 NA non-coding downstream 2252853 32462643 ~ 32472938 (+)

Expression


Co-expression Network