RNA id: TCONS_00066140


Basic Information

Item Value
RNA id TCONS_00066140
length 955
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_033816
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 30201611 ~ 30209790 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTAGCGTTAGTGTTTATAAAGAAGTTATGAAATTACAGAACCTGCTGCAGCAGCTAGTGATTTTAGCGCCCCCTGTCGGACACAGCGCTCAGACACACCGCTGCTGGTTAATAAAGTTATGCgttcaaaaaaataattgtatctCTTTTTAGGAGAGGACGCCGCCTCAGAATCCTGGAATGGACGGGTCCGTGCTTCGGACGTCTCGGCGaataaaagagaaacaaaatCAAAGGAAGAAACAAATTTTACCCCCAAAATGTCTGACCTTTAGGTCTGAGGTGAAAAGCACCAGAAGAGCCGTCAAAAGAAGGATAAGTGGcagtgaaaaagaaaaagaagttaAGAGGTCAAAAGCAGACCCTGATCATGAATCTCTTCCACAGGGTTATCGTGAAGGTTTGTCTGAATATCAGCTGGAGCGATTGGAGAATATCAGAAAGAACCAGGCCTTCCTCAATTCCCTGAATCTGACCGAGATTTCTGAAGCTCTGAGACCCAAGCAGAAGCCTACACAGAAAGGCCTGAAAAAAGAAAAGACCCAAGTGGAGATGCTTCCAGTTCGAAAGTCACTGCGGTTACAGAATAAGGGTCCTCAGAGTACCACTGCTACAGAATTTACCTTTCCTACAACCTATGAGCTTGAAAAAGAAGCTAAACCCCCAGGACCTATTCCACTGGACCCTATCAACTTGGACGAAGATGCCACCTTACCTGATGATTTGTTAGATGTCTGGAATGAAGTCCCGTTAGAACAAAGCACAGGAACACCAGATTTGAAATCGTACGAAAGAATGCTGAAGAAGTTATCTATTGATGACAGTCGTGTTGTGAAAGTTGTGAAAGAACGAATCTGTTGTGCAGCTTTTCACCCTTCCTCAAACTTGCTAATGGCTGCAGGAGACAAATATGGCCACCTGGGACTCTGGAGGCCGGATGCTGAATGGGGGGA

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:2000001 regulation of DNA damage checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-4513 Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA damage checkpoint. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be active in nucleus. Orthologous to human WDR76 (WD repeat domain 76).

Ensembl:

ensembl_id ENSDART00000173525

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068865 lncRNA upstream 84996 30094809 ~ 30117108 (+) True XLOC_033814
TCONS_00068864 lncRNA upstream 125932 30072878 ~ 30076172 (+) True XLOC_033813
TCONS_00068863 lncRNA upstream 571024 29560568 ~ 29631080 (+) True XLOC_033797
TCONS_00068578 lncRNA upstream 734697 29467138 ~ 29467407 (+) True XLOC_033794
TCONS_00068577 lncRNA upstream 739841 29461365 ~ 29462263 (+) True XLOC_033793
TCONS_00066146 lncRNA downstream 187948 30392659 ~ 30399163 (+) False XLOC_033820
TCONS_00068866 lncRNA downstream 192036 30396747 ~ 30399163 (+) True XLOC_033820
TCONS_00066152 lncRNA downstream 421776 30626487 ~ 30627444 (+) True XLOC_033824
TCONS_00066162 lncRNA downstream 702813 30907524 ~ 30909574 (+) True XLOC_033827
TCONS_00066164 lncRNA downstream 725942 30930653 ~ 30944908 (+) False XLOC_033829
TCONS_00066138 mRNA upstream 10747 30178453 ~ 30191357 (+) True XLOC_033815
TCONS_00066137 mRNA upstream 13238 30178253 ~ 30188866 (+) False XLOC_033815
TCONS_00066135 mRNA upstream 134876 30051488 ~ 30067228 (+) False XLOC_033812
TCONS_00066136 mRNA upstream 136918 30051880 ~ 30065186 (+) True XLOC_033812
TCONS_00066134 mRNA upstream 204660 29992889 ~ 29997444 (+) True XLOC_033811
TCONS_00066141 mRNA downstream 36080 30240791 ~ 30267169 (+) False XLOC_033817
TCONS_00066142 mRNA downstream 49941 30254652 ~ 30259425 (+) True XLOC_033817
TCONS_00066143 mRNA downstream 77678 30282389 ~ 30286764 (+) True XLOC_033818
TCONS_00066144 mRNA downstream 167182 30371893 ~ 30390376 (+) True XLOC_033819
TCONS_00066145 mRNA downstream 187902 30392613 ~ 30406629 (+) False XLOC_033820
TCONS_00066122 other upstream 270465 29931525 ~ 29931639 (+) True XLOC_033808
TCONS_00066117 other upstream 349938 29850789 ~ 29852166 (+) True XLOC_033806
TCONS_00066116 other upstream 364365 29836386 ~ 29837739 (+) True XLOC_033805
TCONS_00066115 other upstream 378501 29822214 ~ 29823603 (+) True XLOC_033804
TCONS_00066114 other upstream 394401 29806350 ~ 29807703 (+) True XLOC_033803
TCONS_00066147 other downstream 234194 30438905 ~ 30439021 (+) True XLOC_033821
TCONS_00066148 other downstream 271125 30475836 ~ 30476382 (+) True XLOC_033822
TCONS_00066189 other downstream 1222458 31427169 ~ 31431211 (+) True XLOC_033834
TCONS_00066207 other downstream 2476929 32681640 ~ 32681755 (+) True XLOC_033844
TCONS_00066246 other downstream 3648477 33853188 ~ 33853307 (+) True XLOC_033859

Expression Profile

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