XLOC_033834 (eif3jb)


Basic Information

Item Value
gene id XLOC_033834
gene name eif3jb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 31425976 ~ 31432103 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066187
CAGCATGAAGGCAGAAGCGCGTAGATCAGAGCAGCTCTGTGCACATGCTTTCTCTCAGCTACTAGTTAAACTAACTCACAGTTAGCCAAGATGGCGGATTCAGACGAATGGGACGCTGACAACTTCGAGCCAAATGAGCAGATTAAAATTGCCACCGCCGGGCGGCTGGACAGATGGGAAGGCGAGGACGAGGAGGAAGACGTAAAGGATAACTgggatgatgaggaggaggaggagaaggaggaggagaagaaagtTGAACAGAAAATAGCTGAAGTGAAACCTCCTGAGAAGAAAAAATTAAGTGACAAAATAAAAGAGAAAGAacttttgcaaaagaaaaaacaagaggAGTTGAAAAAGAATCAGGAAACAGCAGCTAGTGAGAGTCTGACGTTAGAGGAGCAGCTAGCAGAAAAAGCTAGACTGAAAAAGCTGCAGGAGGAGGCAGACATGGAATTGGCCCGTGAGGCTTTTGGTGTGGATCCTGCTGCTGCAAATGCCTCAACTACTGTTAACACAACAAACGCCTCTGGAATTGAAGCCATGTGCCCGTCATCCAAAGATGACTTTGTTACATTTGAAAAATTACTGAAAGAAAAGATAACACAGTTTGAAAAATCTGTGCATTATTCAAGCTTTTTGGAATCATTGTTTCGAGAACTTTGTATTTCATTGGAAGTAGACGACCTGAAGAAAATATCTACTTCTTTATCAGTTCTGCTCACTGAAAAACAGAAGCAAGAAAAGGAAAAGAAGgcaaataagaaaaagaaaaaaggtgtTGTACCTGGTGGTGGATTGAAAGCAAACATGAAAGATGACTTTGCTGACTATGGTGGTTTTGACGGTGGTTACGGCAATGAATATGATGACTTCATGTGACAAAGGATCATCGTTCCCCTTCCCATTCCCTCTGTGCTCAGACAGCTCTGCAGACATGCAACATTACCCTTTTCATGCTACTTGTTGCCATCTTGAAAACTGAACAATGTGTCAACCCTTTTCAGTGGTGACAGACTCCTCATAAAGCTGCTATCAGCCCTTTGCACCCCAGTGACAAATGGGGAGAAGCAAATTTATTCAGATGGCCTTGAATTTAAAATGGACTGTATGATGTGGGACATTTTTGATGGAGGAATTTGCTGATTGGCCTAAATACGAATTTCAATGCCTTATAGAGaactttgtagatttttttttcctccctttACTTTGTTTTTAAAGCTGTGCAATTCCAGTTTCACAAAAGTAAATATGATTCTCTATGCAAATTAATTTCTTCCAAGAAAGATTGGTTGTATTTTCTTGCATATTTTAGCACAATTCGATAAAAGTTGAAAATAAAGAATCTAAATTTAATGATAAGAATCAACAGCACGAGCAAATAGAGTGgtaaaatcaaagtaaaaacCGAGCATCTTAATCTGTTGAATTTTGCCCATGCCACAGAATTGCACAATAGCCTACTTGTGCTAATTTTTTGTTAAGcaaagtatattttaaattaagtCCTTACTGCTGCACGCTTGATCAATGGTTCAATGATATTCAATTTCTACTCATCTGATAATGTTGAAAATTTTGGTCCTCTTTTTCTGAAGCAACAGGTCCATGGGTATTATCATAATACAGTAGCAAGCATGTAAAAAGTCAAATGAAATGCAGGTTTATTtatcaaaagtgtttttttttttaacaaatagttTAATTGGACTCAGACAATACAAAGACTCTaaggcattgttttttttttttttttaagaatctaatttaataaaatcattgGTCTAAAGGAA
>TCONS_00066188
GCAGCTCTGTGCACATGCTTTCTCTCAGCTACTAGTTAAACTAACTCACAGTTAGCCAAGATGGCGGATTCAGACGAATGGGACGCTGACAACTTCGAGCCAAATGAGCAGATTAAAATTGCCACCGCCGGGCGGCTGGACAGATGGGAAGGCGAGGACGAGGAGGAAGACGTAAAGGATAACTgggatgatgaggaggaggaggagaaggaggaggagaagaaagtTGAACAGAAAATAGCTGAAGTGAAACCTCCTGAGAAGAAAAAATTAAGTGACAAAATAAAAGAGAAAGAacttttgcaaaagaaaaaacaagaggAGTTGAAAAAGAATCAGGAAACAGCAGCTAGTGAGAGTCTGACGTTAGAGGAGCAGCTAGCAGAAAAAGCTAGACTGAAAAAGCTGCAGGAGGAGGCAGACATGGAATTGGCCCGTGAGGCTTTTGGTAAGAAACAGCACTTTGGTGAAGTCTTCCAATTTcttcatatgtatatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata
>TCONS_00066189
gatttttttttctggagtatCCACTATGATGGAAAACCTGCAATGTTAAGgaaacaatgttttttaattCATCCTGTAGccttaaaacattatatttaaaaaGATAACTgggatgatgaggaggaggaggagaaggaggaggagaagaaagtTGAACAGAAAATAGCTGAAGTGAAACCTCCTGAGAAGAAAAAATTAAGTGACAAAATAAAAGAGAAAGAacttttgcaaaagaaaaaacaagaggAGTTGAAAAAGAATCAGGAAACAGCAGCTAGTGAGAGTCTGACGTTAGAGGAGCAGCTAGCAGAAAAAGCTAGACTGAAAAAGCTGCAGGAGGAGGCAGACATGGAATTGGCCCGTGAGGCTTTTGGTGTGGATCCTGCTGCTGCAAATGCCTCAACTACTGTTAACACAACAAACGCCTCTGGAATTGAAGCCATGTGCCCGTCATCCAAAGATGACTTTGTTACATTTGAAAAATTACTGAAAGAAAAGATAACACAGTTTGAAAAATCTGTGCATTATTCAAGCTTTTTGGAATCATTGTTTCGAGAACTTTGTATTTCATTGGAAGTAGACGACCTGAAGAAAATATCTACTTCTTTATCAGTTCTGCTCACTGAAAAACAGAAGCAAGAAAAGGAAAAGAAGgcaaataagaaaaagaaaaaaggtgtTGTACCTGGTGGTGGATTGAAAGCAAACATGAAAGATGACTTTGCTGACTATGGTGGTTTTGACGGTGGTTACGGCAATGAATATGATGACTTCATGTGACAAAGGATCATCGTTCCCCTTC

Function

symbol description
eif3jb Predicted to enable translation initiation factor activity. Predicted to be involved in formation of cytoplasmic translation initiation complex. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Is expressed in several structures, including lens; midbrain; musculature system; polster; and pronephric duct. Orthologous to human EIF3J (eukaryotic translation initiation factor 3 subunit J).

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2900 Predicted to enable translation initiation factor activity. Predicted to be involved in formation of cytoplasmic translation initiation complex. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Is expressed in several structures, including lens; midbrain; musculature system; polster; and pronephric duct. Orthologous to human EIF3J (eukaryotic translation initiation factor 3 subunit J).

Ensembl:

ensembl_id ENSDARG00000053370

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066187 False 1799 mRNA 0.38 8 31425976 31432103
TCONS_00066188 False 570 lncRNA 0.39 5 31426006 31428707
TCONS_00066189 True 802 processed_transcript 0.38 7 31427169 31431211

Neighbor

gene id symbol gene type direction distance location
XLOC_033833 strc1 coding upstream 520 31395525 ~ 31425456 (+)
XLOC_033832 ctdspl2b coding upstream 30465 31374383 ~ 31395511 (+)
XLOC_033831 casc4 coding upstream 58059 31339129 ~ 31367917 (+)
XLOC_033830 fam189a1 coding upstream 89741 31145386 ~ 31336235 (+)
XLOC_033829 tjp1a coding upstream 283703 30930653 ~ 31142273 (+)
XLOC_033835 mybpc3 coding downstream 406217 31838320 ~ 31899925 (+)
XLOC_033836 NA coding downstream 495885 31927988 ~ 31975960 (+)
XLOC_033837 mettl15 coding downstream 589566 32021669 ~ 32142810 (+)
XLOC_033838 NA coding downstream 738096 32170199 ~ 32171758 (+)
XLOC_033839 lgr4 coding downstream 936923 32369026 ~ 32460223 (+)
XLOC_033822 AL935053.1 non-coding upstream 949594 30475836 ~ 30476382 (+)
XLOC_033821 BX957301.1 non-coding upstream 986955 30438905 ~ 30439021 (+)
XLOC_033814 NA non-coding upstream 1308868 30094809 ~ 30117108 (+)
XLOC_033813 NA non-coding upstream 1349804 30072878 ~ 30076172 (+)
XLOC_033808 BX914219.4 non-coding upstream 1494337 29931525 ~ 29931639 (+)
XLOC_033840 NA non-coding downstream 1030540 32462643 ~ 32472938 (+)
XLOC_033841 BX511109.1 non-coding downstream 1043240 32475343 ~ 32491150 (+)
XLOC_033844 AL929252.1 non-coding downstream 1249537 32681640 ~ 32681755 (+)

Expression


Co-expression Network