Fish Transcriptome and Expression Database

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model fish

XLOC_033844 (AL929252.1)

Basic Information

Item	Value
gene id	XLOC_033844
gene name	AL929252.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007118.7
NCBI id	CM002891.2
chromosome length	74282399
location	32681640 ~ 32681755 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066207
ATTTACAGCCACATCACCCTGCAGCCAAGACTGgttacccactgaagctaagcagggctgagcctgatcagtatctggatgggagaccacatggaaaaacttGGTTGCTGTTGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107704

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00066207	True	116	rRNA	0.50	1	32681640	32681755

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_033843	si:ch73-314g15.3	coding	upstream	36440	32629674 ~ 32645200 (+)
XLOC_033842	fshb	coding	upstream	69080	32605705 ~ 32612560 (+)
XLOC_033841	BX511109.1	coding	upstream	190490	32475343 ~ 32491150 (+)
XLOC_033840	NA	coding	upstream	208702	32462643 ~ 32472938 (+)
XLOC_033839	lgr4	coding	upstream	221417	32369026 ~ 32460223 (+)
XLOC_033845	slc39a13	coding	downstream	12135	32693890 ~ 32716019 (+)
XLOC_033846	si:ch211-150g13.3	coding	downstream	40472	32722227 ~ 32749591 (+)
XLOC_033847	tssc4	coding	downstream	215968	32897723 ~ 32899843 (+)
XLOC_033848	ano9b	coding	downstream	219903	32901658 ~ 32924520 (+)
XLOC_033849	kcnc1a	coding	downstream	346697	33028452 ~ 33088144 (+)
XLOC_033838	NA	non-coding	upstream	509882	32170199 ~ 32171758 (+)
XLOC_033836	NA	non-coding	upstream	705680	31927988 ~ 31975960 (+)
XLOC_033822	AL935053.1	non-coding	upstream	2205258	30475836 ~ 30476382 (+)
XLOC_033853	BX571811.1	non-coding	downstream	487164	33168919 ~ 33171622 (+)
XLOC_033856	NA	non-coding	downstream	669427	33351182 ~ 33352586 (+)
XLOC_033859	BX511006.1	non-coding	downstream	1171433	33853188 ~ 33853307 (+)
XLOC_033860	NA	non-coding	downstream	1267529	33949284 ~ 33955326 (+)
XLOC_033861	CR927368.1	non-coding	downstream	1398429	34080184 ~ 34080298 (+)

Expression

Co-expression Network