XLOC_033845 (slc39a13)


Basic Information

Item Value
gene id XLOC_033845
gene name slc39a13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 32693890 ~ 32716019 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066208
AAAGCACTTCCGGTCGGTGAGACGTGGCTGACTGGAAAATCTTCGAGGAGTGAAATCAGCCTGTGCTGCAGACAGAGCTCCAGCTCAACAGCAGCAGTAGCAGCGCCTGGATGGCAGGGTCTAGCCGGAGAGAAAACTGCAGGAATTACAGCAGGCATCCATGTATCTTCCAAGTGCTTTGCGGAGGTCTGGGCTGATGAGCGCAGGACCAGAGAGGCCCGTTTGGGCATTTGCTGTGCTGCTGCTTGGCGCTGCCCTGCTGGCATCATCCTTTGGAGGGAAGATGATGATTCAGACAGCTGTGGCCCAGGCAAAGACTGCACCTGCAGGACCTGGACCATGGAGCATCAAGGACCTTGTAGACCTCCAATACCTGGATGAGCTCATGTCCATTGACAACCTAGATGTTTGGTTCTGCTCCCTTGTGGGATCAATTGCCATTGGACTCAGTGGCATTTTTCCACTTTTAGTCATACCCATTGAAGCTGGGACCGCCTTGAAAACTGAGGCTGGGTGTCAGAAGCTGAAGAAGCTGCTGAGTTTTGCCATTGGTGGCCTTCTAGGAGACGTGTTTCTTCACCTCCTTCCGGAGGCCTGGGCTTACACTTCCAGTCCTGGTGGCTCCCACAGACATTATTGTACGCAAGGTTTGTGGGTGATAGGAGGTCTGATGTCTTTTCTGACCTTGGAGAAGATGTTTCCTGATGAAGTCGGTGATCCAGAAACCAAAACCTCCTTCCAAAGAACTACATCCTCTTCATCTGATCTGAGCAGCCAGTTCTCTGTGTCCCCGCAAACGAATGGCATCTGCTCAAACAACAACTCCGACTCCAAGCCAAAGACTGACATCAGCCCTTACACACCGCCAGAGAAAATAAAGaCCAGCGGTTATCTAAACCTTCTTGCTAACTGCATTGATAACTTCACTCATGGGCTAGCAGTGGCAGGAAGCTTCTTAGTAAGTCGAAAGGTTGGCTTCTTAACAACGTTTGCCATTCTGCTTCATGAGATTCCTCATGAGGTGGGAGATTTTGCCATTTTGCTGCGAGCAGGCTTTGACCGGTGGAAAGCTGCCCGTATGCAGCTCTCCACAGCATTAGGGGGAGTCCTGGGGGCCTGCTTTGCTCTTTGCTCTCAATCACAGCATGGGGCAGAGAACGCCACTACCTGGATCCTGCCCTTCACCTCAGGTGGCTTTCTCTACATTGCCTTGGTCAATGTGGTTCCTGATCTTCTAGAGGAGACCAACCCAAGGAACTCTCTTCTGCAGGTTCTGCTGTTGTTTTCTGGGATAGGCGTCATGGCTCTGCTCTCAATCGCCATGGACTAGACACAGGCAAGGTCTGCTTTTATCAGGGGACATTTATAGTGCAACCTTGCATTCCTGAGGACTTTTGGATTATTCACTCCACAGTTTGAGCTTTAATAATTTAGACATTTTTGTCACCCTCCCAAAGACCAAGTGAGGAAATGCTAATGAAAGAATTGGCCTTGACAGTTTGGTGCTTGAATCTGCCAGTATATGATTTTAAGCCTTATATTTCACACTCCAGATTAAAtttgaactgaaaacaaaaaaacagatttgTACAAATGGTGCTCAGAAATGactgtggattttttttattattgttaatatttcaTCCTATTTTCTTCTGGTTCATATTCCTGCTGTTGAAATTGATACTTTTGACACAATGTTACATTACCAAAGGCTACTTTAGTGTAATTTGCACATGCTAGTTTTACTTCATTCCTAATTAACAGACAATATACATAATTGTGTTTCTGATGGTCATCAAGATAGTGTTTTATAAAGCTAATTCTACTTCGCTGTTACAAATCACTCTGTGGAAAGTTACACAAGTTTATTTCACACTTCATTTGCTCAAGACAGCCACACTTTGCACGGCTACACATTCCTTGCTGTTTTTGTCAAACACGTCAAATCATTTACAGGCTTTTTTTGTAGTATTCCTCAATCACTAAAGTTGTTTTTCCTTAATCGCATACTTCTGTTACAgtatttaatgttgttattattaattatgttctAATAGCCACTACACTGCTGCATTTTTAGCTTTAATTTACTGATCGTCTATATAGTACATTGTGGTCTTGGCATTACATTTCAGTGATCCAGACTGGTGTGTAGCCAAATcaatctcaaaaataatacatttccaaaatataattcatacatcAACCGCACGGTTCAAATTTACATAATCCAATGCATAaacgcacaaatccaatttgtcaaCTCAAAACATAATatgaaaatacacaaatcaaattcgtaAATTCCAAACACGGTTCATATACACTaatccagttcgtaaattcaaaacaattcatatatcttaacaaatcaaattcgtaaattcaaaacacgattcattcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatatacacacacacgcacacgcatacaaatccaattcgtgaatttaaaatgcaattcataTATGCACAAAACCAACTCACCGAAAATATTCATGATTTTTGcttttgaattcacaaattgttgaatttatgaattgttttgaatttaaaaattggattttgtaTAATGCGAATTGTGCCATGcatgtgtgaattttattttgtaaatattatatttttgagaCCAATCTCACTCCATAGTCTGGAGGATTTATGGATTTATAAGGTCACAGTTCTTTTACTCAGTGGACTTGGTGCCAATTCAAGCATttcaatcagatttttaaaaaaagatgatgaTAAATGGATTTTGTGTTTAACGCCTTTGTGTATGAAACGTTACTGAAGAGACGGTTCTGAATCATGACTTGGAACATCAGAACAGCTTTTTTGCcagaatgtaaatattttaaaagagattatatatgtatatatttattctatgAACAATGTCATGTTGAAAGAACAATGTCAAAGTTTGAAAACTTTAATTCCTCCCATTGTAATAGTTGAAATAAATGAGTTTTTCTGTTTGATTAAA
>TCONS_00066209
CCTGCTGGCATCATCCTTTGGAGGGAAGATGATGATTCAGACAGCTGTGGCCCAGGCAAAGACTGCACCTGCAGGACCTGGACCATGGAGCATCAAGGACCTTGTAGACCTCCAATACCTGGATGAGCTCATGTCCATTGACAACCTAGATGTTTGGTTCTGCTCCCTTGTGGGATCAATTGCCATTGGACTCAGTGGCATTTTTCCACTTTTAGTCATACCCATTGAAGCTGGGACCGCCTTGAAAACTGAGGCTGGGTGTCAGAAGCTGAAGAAGCTGCTGAGTTTTGCCATTGGTGGCCTTCTAGGAGACGTGTTTCTTCACCTCCTTCCGGAGGCCTGGGCTTACACTTCCAGTCCTGGTGGCTCCCACAGACATTATTGTACGCAAGGTTTGTGGGTGATAGGAGGTCTGATGTCTTTTCTGACCTTGGAGAAGATGTTTCCTGATGAAGTCGGTGATCCAGAAACCAAAACCTCCTTCCAAAGAACTACATCCTCTTCATCTGATCTGAGCAGCCAGTTCTCTGTGTCCCCGCAAACGAATGGCATCTGCTCAAACAACAACTCCGACTCCAAGCCAAAGACTGACATCAGCCCTTACACACCGCCAGAGAAAATAAAGaCCAGCGGTTATCTAAACCTTCTTGCTAACTGCATTGATAACTTCACTCATGGGCTAGCAGTGGCAGGAAGCTTCTTAGTAAGTCGAAAGGTTGGCTTCTTAACAACGTTTGCCATTCTGCTTCATGAGATTCCTCATGAGGTGGGAGATTTTGCCATTTTGCTGCGAGCAGGCTTTGACCGGTGGAAAGCTGCCCGTATGCAGCTCTCCACAGCATTAGGGGGAGTCCTGGGGGCCTGCTTTGCTCTTTGCTCTCAATCACAGCATGGGGCAGAGAACGCCACTACCTGGATCCTGCCCTTCACCTCAGGTGGCTTTCTCTACATTGCCTTGGTCAATGTGGTTCCTGATCTTCTAGAGGAGACCAACCCAAGGAACTCTCTTCTGCAGGTTCTGCTGTTGTTTTCTGGGATAGGCGTCATGGCTCTGCTCTCAATCGCCATGGACTAGACACAGGCAAGGTCTGCTTTTATCAGGGGACATTTATAGTGCAACCTTGCATTCCTGAGGACTTTTGGATTATTCACTCCACAGTTTGAGCTTTAATAATTTAGACATTTTTGTCACCCTCCCAAAGACCA

Function

symbol description
slc39a13 Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in cellular zinc ion homeostasis and zinc ion transmembrane transport. Predicted to act upstream of or within zinc ion transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome spondylodysplastic type 3. Orthologous to human SLC39A13 (solute carrier family 39 member 13).

GO:

id name namespace
GO:0006882 cellular zinc ion homeostasis biological_process
GO:0071577 zinc ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006829 zinc ion transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030616-17 Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in cellular zinc ion homeostasis and zinc ion transmembrane transport. Predicted to act upstream of or within zinc ion transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome spondylodysplastic type 3. Orthologous to human SLC39A13 (solute carrier family 39 member 13).

Ensembl:

ensembl_id ENSDARG00000000442

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066208 False 3061 mRNA 0.39 10 32693890 32716019
TCONS_00066209 True 1206 mRNA 0.49 9 32695954 32714419

Neighbor

gene id symbol gene type direction distance location
XLOC_033844 AL929252.1 coding upstream 12135 32681640 ~ 32681755 (+)
XLOC_033843 si:ch73-314g15.3 coding upstream 48690 32629674 ~ 32645200 (+)
XLOC_033842 fshb coding upstream 81330 32605705 ~ 32612560 (+)
XLOC_033841 BX511109.1 coding upstream 202740 32475343 ~ 32491150 (+)
XLOC_033840 NA coding upstream 220952 32462643 ~ 32472938 (+)
XLOC_033846 si:ch211-150g13.3 coding downstream 6208 32722227 ~ 32749591 (+)
XLOC_033847 tssc4 coding downstream 181704 32897723 ~ 32899843 (+)
XLOC_033848 ano9b coding downstream 185639 32901658 ~ 32924520 (+)
XLOC_033849 kcnc1a coding downstream 312433 33028452 ~ 33088144 (+)
XLOC_033850 zgc:153219 coding downstream 414620 33130639 ~ 33143009 (+)
XLOC_033838 NA non-coding upstream 522132 32170199 ~ 32171758 (+)
XLOC_033836 NA non-coding upstream 717930 31927988 ~ 31975960 (+)
XLOC_033853 BX571811.1 non-coding downstream 452900 33168919 ~ 33171622 (+)
XLOC_033856 NA non-coding downstream 635163 33351182 ~ 33352586 (+)
XLOC_033859 BX511006.1 non-coding downstream 1137169 33853188 ~ 33853307 (+)
XLOC_033860 NA non-coding downstream 1233265 33949284 ~ 33955326 (+)
XLOC_033861 CR927368.1 non-coding downstream 1364165 34080184 ~ 34080298 (+)

Expression


Co-expression Network