XLOC_033850 (zgc:153219)


Basic Information

Item Value
gene id XLOC_033850
gene name zgc:153219
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 33130639 ~ 33143009 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066226
TTTTCAAAGAGAAATTCATTTCGAGCTGTTCCCCATCGATCTCTGaggattttttccacattttattccACTGTTATTTTTTATGCTATATGTTTCTTTTGAAGACAACAATCAACggaataaaacatgttttcagaACTCATCATCCTCTCACTGAGTTTTTGGTTCTGTAACACTGCACAAACAAACCAACAAGAAACATCATCTACTAATATTGATGATGTCAGCATCAACCCTGAGATTGCAAAATTTGTGGACAGAATTAAATATGTTGCTCGAAGTTGCAAAGAGATCCGTGACAAGTACCATGTTTATGAGGATGGCCTGTACTATCTGATCTCTTCAAGAGGAGTCCTTTACCAGACGTTCTGTGACATGACCACTGCAGGCGGCGGCTGGACGCTGGTGGCCAGTGTTCACGAAAACAACATGTATGGAAAGTGTACAGTTGGTGACCGCTGGTCTAGTGAACAAGGCAGCAATGAAAACCGGCCTATAGGTGAAGGCACATGGGCAAACAAAGTCACATTTGGAGCCGCAGAGGCCGCAACAAGTGATGATTACAAGAATCCGGGATACTATGACATTGCAGCTCAGGATGTTTCTGTGTGGCATGTGCCTAATAATATGGAGTTGGAACACTGGAGCACTGGCTCCATTCTCAGATACCACACTGAAAATCACTTCTTAACCCTACACGGAGGAAACCTATTCAAGTTATTTACGAAATTCCCTGTGAGGTTTGGAATCGGCTCCTGCAACATTGATAATGGACCTGCTGTCCCGATCGTGTATGATACTGGAAATGAAGAATCTACCAAAAAACTGTATGGTCCAAGTGCAAGAACACAATTTGAGCCTGGATTCATCACATTCAGAGTCTTAAATAATGAAAAGGCAGCTATGGCACTTTGCTCTGGGGCTAAGCCAACTGACTGTAACACTGAGCATTTTTGTATTGGTGGAGGCGGACACTTTCCTGAGGGTTACCCTAAACAATGTGGAGACTTTACGGGTTTTGACTGGAATGGCTATGGTACTAATACAGAATGGAGTGCTTCCAGAGAGATAACTGAAGCAGCTGTGCTTCTCTTTTATCGCTGAAACTTGAGTATATCAGAGTTTTAAGAAGAGACTTGTTGTGATGTACTTGCTGGAGCTGTCTCATAAAAGTATCCTGAGCAACGGAGTTGTCAAGCATTTTCCACAGTAATTAGATCTTACTTTGGcatgttgtatttttaatttagattACTGATTAGCCAATTgaatattcatccattcatatgAGCATTCACTCTCTCTGTCTCAAACACACAATCGCACACACACCATACTATGGTAAGTAAGTAGTAAGTAAGTATAACAAGTATATGAATTGATGTGTGTGGtaatttttcaattcaattcaattcagctttatttgtatagcgcttttacaatgtagattgtgtcaaagcagcttcacataaatggtcataataatggtcataataataattctattgTTGTGATAGTAATGCACAACCATAAacaaaaattgttttgaaaatgtggaacTTTAGAGTTTATTCAGTGTTATGGATTTACTACACAGCACTGATGATAATCCTCTttccaagttttttttattaaagcattGGATGTTGCTTAACTAAAGCCCAGTGTGTTACCAAGAATGTGGACTATTGACATATAAAATATGGATCACTGACAATCTGAAATGATAAGGATGTTTTATAGCaccattttttttatcaatctGAACCTTGAGAACAAAATCCTTGAAAACCATTATCAGAAAGCACAACTTCTCTCAATAACCTTTCATCTGTATAGCTTAATTAAGGATGTGCTGCTTTTATAAATAAGCCATTGATAAGAAAAGAGCAACTACTATAGACAGAGAATGTTTTTCTTTAGAATAGAGAACCAGTGAAACATTTAAACGATTAGGTTATTACCTCAAAACCTTATATTTAGCCTACATATGAAACTTTtgtgtttggttttcttttttggaagactaaaaaaatgtttaaatgtataaatgaacaGTGGAGCACATTACAAGTATGTTCAAGAGTAATGTTGTCAGataactttttgttttcaaataatggaatgttttcaaataactaataaactaatgcatttctttttca
>TCONS_00066227
GAGCTGTTCCCCATCGATCTCTGaggattttttccacattttattccACTGTTATTTTTTATGCTATATGTTTCTTTTGAAGACAACAATCAACggttttttaacttaatttaaaacgGTTCTGCTCTCGAACAgaataaaacatgttttcagaACTCATCATCCTCTCACTGAGTTTTTGGTTCTGTAACACTGCACAAACAAACCAACAAGAAACATCATCTACTAATATTGATGATGTCAGCATCAACCCTGAGATTGCAAAATTTGTGGACAGAATTAAATATGTTGCTCGAAGTTGCAAAGAGATCCGTGACAAGTACCATGTTTATGAGGATGGCCTGTACTATCTGATCTCTTCAAGAGGAGTCCTTTACCAGACGTTCTGTGACATGACCACTGCAGGCGGCGGCTGGACGCTGGTGGCCAGTGTTCACGAAAACAACATGTATGGAAAGTGTACAGTTGGTGACCGCTGGTCTAGTGAACAAGGCAGCAATGAAAACCGGCCTATAGGTGAAGGCACATGGGCAAACAAAGTCACATTTGGAGCCGCAGAGGCCGCAACAAGTGATGATTACAAGAATCCGGGATACTATGACATTGCAGCTCAGGATGTTTCTGTGTGGCATGTGCCTAATAATATGGAGTTGGAACACTGGAGCACTGGCTCCATTCTCAGATACCACACTGAAAATCACTTCTTAACCCTACACGGAGGAAACCTATTCAAGTTATTTACGAAATTCCCTGTGAGGTTTGGAATCGGCTCCTGCAACATTGATAATGGACCTGCTGTCCCGATCGTGTATGATACTGGAAATGAAGAATCTACCAAAAAACTGTA
>TCONS_00066228
GAGCTGTTCCCCATCGATCTCTGaggattttttccacattttattccACTGTTATTTTTTATGCTATATGTTTCTTTTGAAGACAACAATCAACggttttttaacttaatttaaaacgGTTCTGCTCTCGAACAgaataaaacatgttttcagaACTCATCATCCTCTCACTGAGTTTTTGGTTCTGTAACACTGCACAAACAAACCAACAAGAAACATCATCTACTAATATTGATGATGTCAGCATCAACCCTGAGATTGCAAAATTTGTGGACAGAATTAAATATGTTGCTCGAAGTTGCAAAGAGATCCGTGACAAGTACCATGTTTATGAGGATGGCCTGTACTATCTGATCTCTTCAAGAGGAGTCCTTTACCAGACGTTCTGTGACATGACCACTGCAGGCGGCGGCTGGACGCTGGTGGCCAGTGTTCATGAAAACAACATGTATGGAAAGTGTACAGTTGGTGACCGCTGGTCTAGTGAACAAGGCAGCAATGAAAACCGTCCTGAAGGTGAAGGCACATGGGCAAACAAAGTCACATTTGGAGCCGCAGAGGCCGCTACAAGTGATGATTACAAGAATCCGGGATACTTTGACATTGCGGCTCAGGATGTTTCTGTGTGGCATGTGCCTAATAATATGGAGTTGGAACATTGGAGCACTGGCTCCATACTGAGATACCACACTGACAACAGCTTCTTAACCCTACATGGAGGAAACCTTTTCAGACTGTTCAAGAAATTCCCTGTGAGGTTTGGAATTGGCTCCTGGAACATCGATAACGGACCTGCTGTTCCAATTGTGTATGATACTGGAAATGAAGAATCTACCAAAAAACTGTA
>TCONS_00066229
TGGCaggaataaaacatgttttcagaACTCATCATCCTCTCACTGAGTTTTTGGTTCTGTAACACTGCACAAACAAACCAACAAGAAACATCATCTACTAATATTGATGATGTCAGCATCAACCCTGAGATTGCAAAATTTGTGGACAGAATTAAATATGTTGCTCGAAGTTGCAAAGAGATCCGTGACAAGTACCATGTTTATGAGGATGGCCTGTACTATCTGATCTCTTCAAGAGGAGTCCTTTACCAGACGTTCTGTGACATGACCACTGCAGGCGGCGGCTGGACGCTGGTGGCCAGTGTTCACGAAAACAACATGTATGGAAAGTGTACAGTTGGTGACCGCTGGTCTAGTGAACAAGGCAGCAATGAAAACCGGCCTATAGGTGAAGGCACATGGGCAAACAAAGTCACATTTGGAGCCGCAGAGGCCGCAACAAGTGATGATTACAAGAATCCGGGATACTATGACATTGCAGCTCAGGATGTTTCTGTGTGGCATGTGCCTAATAATATGGAGTTGGAACACTGGAGCACTGGCTCCATTCTCAGATACCACACTGAAAATCACTTCTTAACCCTACACGGAGGAAACCTATTCAAGTTATTTACGAAATTCCCTGTGAGGTTTGGAATCGGCTCCTGCAACATTGATAATGGACCTGCTGTCCCGATCGTGTATGATACTGGAAATGAAGAATCTACCAAAAAACTGTATGGTCCAAGTGCAAGAACACAATTTGAGCCTGGATTCATCACATTCAGAGTCTTAAATAATGAAAAGGCAGCTATGGCACTTTGCTCTGGGGCTAAGCCAACTGACTGTAACACTGAGCATTTTTGTATTGGTGGAGGCGGACACTTTCCTGAGGGTTACCCTAAACAATGTGGAGACTTTACGGGTTTTGACTGGAATGGCTATGGTACTAATACAGAATGGAGTGCTTCCAGAGAGATAACTGAAGCAGCTGTGCTTCTCTTTTATCGCTGAAACTTGAGT
>TCONS_00066230
ATGGATTATTTACAGCAACATTTGTACACAGCAAACAACATACAACAACATAAGTCATGCATTAAATCAACTGCACCAATGTCATATAGAGAAATGCATGGGTATATGTTGTATGGCCTGTACTATCTGATCTCTTCAAGAGGAGTCCTTTACCAGACGTTCTGTGACATGACCACTGCAGGCGGCGGCTGGACGCTGGTGGCCAGTGTTCATGAAAACAACATGTATGGAAAGTGTACAGTTGGTGACCGCTGGTCTAGTGAACAAGGCAGCAATGAAAACCGTCCTGAAGGTGAAGGCACATGGGCAAACAAAGTCACATTTGGAGCCGCAGAGGCCGCTACAAGTGATGATTACAAGAATCCGGGATACTTTGACATTGCGGCTCAGGATGTTTCTGTGTGGCATGTGCCTAATAATATGGAGTTGGAACATTGGAGCACTGGCTCCATACTGAGATACCACACTGACAACAGCTTCTTAACCCTACATGGAGGAAACCTTTTCAGACTGTTCAAGAAATTCCCTGTGAGGTTTGGAATTGGCTCCTGGAACATCGATAACGGACCTGCTGTTCCAATTGTGTATGATACTGGAAATGAAGAATCTACCAAAAAACTGTATGGTCCAAGTGCAAGAAGTATGCCTGGATTCATCACATTCAGAGTCTTCAATTTTGAAAAGGCAGCTATGGCTCTTTGTTCAGGCACTAAACCAACTGGGCATAACACTGAACATTTCTGTATTGGTGGAGGCGGACACTTTCCTGAGGGTTACCCTAAACAATGTGGAGACTTTACGGGTTTTGACTGGAGTGGCTATGGTTCTAATATCGAATGGAGTGCTACTAGAGAGATAACTGAAGCAGCAGTGCTTCTCTTTTATCGCTGA
>TCONS_00066231
CTGGCTCATAGAAATGGTTGTCTTTCTAGCAAAAATGTTTTCAGGGATCCTCATTTTGTCATTGGGCTTATGGTTCTGTGATGCAAAATCAATGGGGGCCATGTATGTAATACAAGAAACAGAAACACCATGTATTAACATCAGTGACTCCAACAGCAACCATGAACTTGAAAAACTTCTGGACAGAATTAAATATGTTGCTCGAAGCTGCAAAGAAATCCGTGACAAGTACTATGTTTATGAGGATGGCCTGTACTATCTGATCTCTTCAAGAGGAGTCCTTTACCAGACGTTCTGTGACATGACCACTGCAGGCGGCGGCTGGACGCTGGTGGCCAGTGTTCATGAAAACAACATGTATGGAAAGTGTACAGTTGGTGACCGCTGGTCTAGTGAACAAGGCAGCAATGAAAACCGTCCTGAAGGTGAAGGCACATGGGCAAACAAAGTCACATTTGGAGCCGCAGAGGCCGCTACAAGTGATGATTACAAGAATCCGGGATACTTTGACATTGCGGCTCAGGATGTTTCTGTGTGGCATGTGCCTAATAATATGGAGTTGGAACATTGGAGCACTGGCTCCATACTGAGATACCACACTGACAACAGCTTCTTAACCCTACATGGAGGAAACCTTTTCAGACTGTTCAAGAAATTCCCTGTGAGGTTTGGAATTGGCTCCTGGAACATCGATAACGGACCTGCTGTTCCAATTGTGTATGATACTGGAAATGAAGAATCTACCAAAAAACTGTATGGTCCAAGTGCAAGAAGTATGGCATGTGTATTATTTACAAGGCATCATCATTATTTGTGATCATATG
>TCONS_00066232
AATGGTTGTCTTTCTAGCAAAAATGTTTTCAGGGATCCTCATTTTGTCATTGGGCTTATGGTTCTGTGATGCAAAATCAATGGGGGCCATGTATGTAATACAAGAAACAGAAACACCATGTATTAACATCAGTGACTCCAACAGCAACCATGAACTTGAAAAACTTCTGGACAGAATTAAATATGTTGCTCGAAGCTGCAAAGAAATCCGTGACAAGTACTATGTTTATGAGGATGGCCTGTACTATCTGATCTCTTCAAGAGGAGTCCTTTACCAGACGTTCTGTGACATGACCACTGCAGGCGGCGGCTGGACGCTGGTGGCCAGTGTTCATGAAAACAACATGTATGGAAAGTGTACAGTTGGTGACCGCTGGTCTAGTGAACAAGGCAGCAATGAAAACCGTCCTGAAGGTGAAGGCACATGGGCAAACAAAGTCACATTTGGAGCCGCAGAGGCCGCTACAAGTGATGATTACAAGAATCCGGGATACTTTGACATTGCGGCTCAGGATGTTTCTGTGTGGCATGTGCCTAATAATATGGAGTTGGAACATTGGAGCACTGGCTCCATACTGAGATACCACACTGACAACAGCTTCTTAACCCTACATGGAGGAAACCTTTTCAGACTGTTCAAGAAATTCCCTGTGAGGTTTGGAATTGGCTCCTGGAACATCGATAACGGACCTGCTGTTCCAATTGTGTATGATACTGGAAATGAAGAATCTACCAAAAAACTGTATGGTCCAAGTGCAAGAACAAATTTTGAGCCTGGATTCATCACATTCAGAGTCTTCAATTTTGAAAAGGCAGCTATGGCTCTTTGTTCAGGCACTAAACCAACTGGGCATAACACTGAACATTTCTGTATTGGTGGAGGCGGACACTTTCCTGAGGGTTACCCTAAACAATGTGGAGACTTTACGGGTTTTGACTGGAGTGGCTATGGTTCTAATATCGAATGGAGTGCTACTAGAGAGATAACTGAAGCAGCAGTGCTTCTCTTTTATCGCTGAACCTTTAATCAACCTTAAATCTTCTGCTTGAAATATTCAAAAACACTTCAGTGTTACACAAACAGTTGTTTGCTCAAATGTTTTAAGGttaaaaacctttaaataaaCCTTCATATATGTATAGTGTAAAGATGAACAAAAAGATGTCTTTTTTTGGTCTTTAATTGTTAATAAATTGTTCATGAttgtatatattttcaaataaaacaatGGATAACCTGTTCTGACAATGAA

Function

symbol description
zgc:153219 Predicted to enable oligosaccharide binding activity. Predicted to be active in extracellular space. Orthologous to human ITLN2 (intelectin 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050411-58 Predicted to enable oligosaccharide binding activity. Acts upstream of or within induction of bacterial agglutination. Predicted to be active in extracellular space. Is expressed in digestive system; eye; gill; integument; and post-vent region. Orthologous to human ITLN2 (intelectin 2).
ZDB-GENE-060929-144 Predicted to enable oligosaccharide binding activity. Predicted to be active in extracellular space. Orthologous to human ITLN2 (intelectin 2).

Ensembl:

ensembl_id ENSDARG00000054054 ENSDARG00000093796 ENSDARG00000105598

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066226 False 2165 mRNA 0.37 8 33130639 33134907
TCONS_00066227 False 847 mRNA 0.42 6 33130661 33133293
TCONS_00066228 False 847 mRNA 0.42 6 33130661 33142207
TCONS_00066229 False 1002 mRNA 0.44 7 33132074 33133855
TCONS_00066230 False 891 mRNA 0.44 6 33133547 33142775
TCONS_00066231 False 824 lncRNA 0.43 6 33136533 33142275
TCONS_00066232 True 1252 mRNA 0.40 8 33136545 33143009

Neighbor

gene id symbol gene type direction distance location
XLOC_033849 kcnc1a coding upstream 42495 33028452 ~ 33088144 (+)
XLOC_033848 ano9b coding upstream 206119 32901658 ~ 32924520 (+)
XLOC_033847 tssc4 coding upstream 230796 32897723 ~ 32899843 (+)
XLOC_033846 si:ch211-150g13.3 coding upstream 381048 32722227 ~ 32749591 (+)
XLOC_033845 slc39a13 coding upstream 414620 32693890 ~ 32716019 (+)
XLOC_033851 itln2 coding downstream 2520 33145529 ~ 33148307 (+)
XLOC_033852 si:ch211-194p6.10 coding downstream 8722 33151731 ~ 33155212 (+)
XLOC_033853 BX571811.1 coding downstream 25910 33168919 ~ 33171622 (+)
XLOC_033854 ITLN1 coding downstream 29057 33172066 ~ 33176106 (+)
XLOC_033855 coro2ba coding downstream 136099 33279108 ~ 33341921 (+)
XLOC_033844 AL929252.1 non-coding upstream 448884 32681640 ~ 32681755 (+)
XLOC_033841 BX511109.1 non-coding upstream 639489 32475343 ~ 32491150 (+)
XLOC_033840 NA non-coding upstream 657701 32462643 ~ 32472938 (+)
XLOC_033838 NA non-coding upstream 958881 32170199 ~ 32171758 (+)
XLOC_033836 NA non-coding upstream 1154679 31927988 ~ 31975960 (+)
XLOC_033856 NA non-coding downstream 208173 33351182 ~ 33352586 (+)
XLOC_033859 BX511006.1 non-coding downstream 710179 33853188 ~ 33853307 (+)
XLOC_033860 NA non-coding downstream 806275 33949284 ~ 33955326 (+)
XLOC_033861 CR927368.1 non-coding downstream 937175 34080184 ~ 34080298 (+)

Expression


Co-expression Network