XLOC_033846 (si:ch211-150g13.3)


Basic Information

Item Value
gene id XLOC_033846
gene name si:ch211-150g13.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 32722227 ~ 32749591 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066210
CTCAGCACTggtcctctcctctcctcttccCATCTCTCcctcaaaaacaaaacagatggTGGAAAAACAGCACATCTGCCCGCGCGAGCCGCAACAATAGATCGCATTGAGCCGGAGTCGCGCCTGGTCATGCCCGCGTCCGAGAGCAGCTAGAaatcggtgtgtgtgtgtttatttgtttttcttcattcGCCTTTCACAACGGCTGCCGAGGGAAGACCGCGCGTCTTTCTAGGCTCTCCAACGAGAGGAGAAGATGGCCGCCATTAAGATTTTAACCAGCGCGGGGCTTTTCTTGGCGTTTTGCGCTCTGGTCTTGTTGGCTATGGCCATCTGCACCGATTACTGGTACGAGACGGATGCTCGGCGGCACCGAGAGCGCTGTAAGAACTACGCAAACAAGCGTAACGATCCCGGATACATTTACATCTCAAATCACAACTTGCCGCTCCAGATGCCACCGAAGGGCTACGAGAGGAAAGCGACGGAACCGCGCGTGAAGCGGCACATCCCGGCGTCCGCCACGGCGATGGAGTCTCACTGCAGCCGCCAGTTCAACTCCACCATCTCCGGGCTGTGGAGGAAGTGCCACCGCGAGGGCTTTGACCTGCAGACCGAGGATCTCATTTTGAACGGGTTGATCCAGAGATGCACCCCAGTGAAGTATCATTACACCTCTTCAATCCTGCCTCGAAACCTCCCCGCCAACATCACCAAGACCATCCGGCAGGATGAGTGGCATGCGCTGCATCTGCGCAGGATGACAGCAGGTTTTGTGGGCATGGCTGTCTCTATCATCCTCTTTGGCTGGATCATCGGCGTTCTTGGATGCTGCCAGCAACATGATCTCATGCAGTATGTAGCTGGACTACTCTTCCTCATGGGCGGAACCTGCTGTATTATCTCCCTCTGCACGTGTGTGGCCGGCATCAACTTCGAGCTGTCGCGTTACCCGCGCTACCTGTACGGCCTTCCAGAGGACATCAGTCACGGCTACGGCTGGTCCATGTTCTGTGCCTGGGGTGGGCTGGGCCTCACCCTGCTGGCCGGTTTCTTATGCACACTGGCTCCTTCTTTAAGCAGCCCGCTGGCCCGCACCACAGTCCACAAGTCCAGGCACGAAAACGGGACTGTGTGACCAGACACTTCCTGGAGCAACTTTTCTGAAAGTCTGCATTAGGACGAAATGTTTGTCCTGTTCATCCTCATCATGCAGTATATTGACTGGATCGTCCCTCTGTCCGTTTTCATATGACTTGTGTACGCTGTCCATTTGTTCAGAAGTCTATAAGTGTTCTGAACAGAGTCCAGAGGAGCAAATGGATCCACACGCACAGACCACCGAGCATCTTCCACTCTCTCACGTGTCTCACTCTGGTTCTTTGTGGCACAAAAAAAGCCCAATTTTCACTTCTCCGCTTCATGACATGAGAAGCAAACCAGAGGTGATGGTCTTCTCCTGTCTACAAGAAGATTTGTAATAAAATGGTGCTCTCTTTTCAAAGATCTCACAACTGCACAAACATCTTTTCAAGAGGACAAATAAATGCACAGGTTTTTCTTCAAGCTGGAGGACTGTAAGCCTGAAATCAAGAAAGGAGAGGTGAGAGTATTTCTGAAGCACATTTGCGAAAGCCTCAAAGAGTCTGTATGCGTACAAAAAGTTTGATTTTGTCTAGATTTCTGGTCTGCATTTGTATGAAATTATCAGCACAGACTCATTGGAAATACCCGCCTCAGCCTATATTTTTGTGAATACGTTACTCTGAGTACCGTCAGTGtatatttcagatgacaaatccactagagcatttttgcaaatctaaaatacGTTACTTATGCTGGATACACACTGAAATATTTAAACATCTTATAAGATTGTTAAGATGTTAGAGACCACAAACACAGGGACAAAAAATATCCTAGATCATCCTagaacagggatgggcaaacttgatcctcaagggccggtgtccctgcagagttttgttccaacactagtcaaacacacctgaacaaactaatcagtgtcttcaagatcacttgaactctatagggaggtctgttcaggacactggccctctaggaccgagattgcccacccctgtCCTAGACCAAGCCAAATCCTTTACCATTTTGCTTGAATAATGTGTGCTGTGCCATGATGTAACAAAAACCACACGACACACACCAACAGATATTTAACCAGAGTCCCGAATGTGAACACGAAATCTCTCGAgactaataaacaaataaacatttgtgTTGTTGCCACAAATCGACAAGCTGATCCTTTATCTGTGCGgtccaaatatattttactttgatgTGCCATGACAGAGTTTGATATTCTTCTGTCAGCTTGATTTCTGATtggatatttaattttttcatttatatattgttCATATAGTTTCATTTATTGACAATCTCCAGCTTATTTGCATCTTCGCTCTGttgaatttttttacatttgcgaTTGGGGCACCTCTGACATTCTTCCTAGTAGATTAGTTACAGAAACGTGATCTCTATTTTAAATTGTGGCGGGGGTTTTTTTAGTCGGCTGCCATTACAAATTGTTGTGGTGGTGGTGTGAGCTGTGGTATAGTTTCGCCCCTCCACTGTGATTTCTTGGCTAGCTCAATAGTGACACTGTTTTTTTCAAGTGTTGCGAGATAAAAAACAGACCGCTCAGTAAAATGTCTGCTCACAGTTCCTCGCTGCACTGCAGGTGCTCAGAAAATGCAGTGTTATCATTGATGACAACAACAGAAACCAAAACACTCAGCTcgagaaaaaaaattacttataggTCATTCTGAACAAACCTCACACCTCATCAAAATCTCATCATGTTGTCATGTGTAACCAGcattagaataataataacaacaataataacaattcctTACATGTATTGCTTTTTCTGGACacttggtggagaggagacagagtgacaAAGCCAATTATtatatggttaggaggccataatggacaAGGGTCAGTGACAAATTtggccagggttaaacccctactctggatgttttaaatgacatcctgagatttttaacAAGCACAGAGGGTCAGGACcccagtttaacgtctcatccgtaagaaagtgctcactgagcagtatagagtccacttcactatactgggatgttaggacccacactgactgcaggttaagcaccccctgctagtcttactaacaccacttccggcagcaacctagctttcccatgtggtctctcattCAGGTACTGACAGCCCTGCTTATCTTCGGTGGGCGACCATGTGATAGTTGCAGagacattttgttgtacgtttcaggtaAACATCCTTCCTGTACATATCCATGAGAAGGCAGGACTTGTTGTACAGATCACCAagcgaaccactgacctaaacccaaccaatagtgctttTAAAAGCAAACATATTAGAAAAATTCAACCACGTAATTTTACAAACAGTTCTTATTTTTCCAATGTATTGGAACCTGTGTGCTCTGCATAATAAGTACAAAACCAAAGCAACCTGACTACATCAGAAAAGTTGTCAATCTGGAGGTAGACAGGTCAGTTAATTACAAACCACCTTcaagttttttgtgtgtgcttatTTGGTGCTGTTCAAAGAACTGCACAGAAAGAATCAGTTTTATCAATAGTTTGTCCCTGCAAATATGATTAGTGTGAAATGAAACTGATGATACTGCCCCGTAGCTTTCATTTTAGCTACAAATCACACTCAAACGTAGGCTGAAGCCTGTATTTCCAACGAGCCTGTCCTGCAAACTAGGCTGGGGATACAAAGAGAGccttttcactctttgttatgaAGGTAAACAGTTGGCTTGTCTGTGGTACAGTAGCTGTTTTTTAGGGGGAATCTGATTGAAATTATTGTAACTAAATGGCATGTGAATTACCAACCTAATTTGTTTATGAAAATGTTTGTTGGAAGTCATTTTCTCATGAAGCCTTATTGCTGTTGTGAGCACAACATGATATGAACGAGAGTTACACAAGAGCTCAGCACCTTCCAGCCACTAATGAATGTTGAGTAGTCAAGATATAGTTGGAGGTTGAAGACTTTTAAGAGAATTCAGTGTTACACGTGGTCACCAAAAGTTATATGAGGTCTACACAATGCAGAAGCTTTTTTTCTGTTTCgggataaaaagaaaaaaataattgtgactttttatCTCACTATTGTGTTTTTGTCACTTCAAGTTACAAGTAACATCACAGAAGCCAGGAATAGAAGACAGATTGTAAAAGAGTTACAATTATGAGGATTTGTTCTTATAATTTAATGTTTCTATAATAGAAACGTGTGGGAATTACAGGATTTAACATCAGAattggcaaaaataaataaaattgtagttGTGGAAATAATAATGTGCCAAACATAGGCCTGAACTTAAAGTTGTAAGAAATTCATTTATAATTGACACATTTCATAATTTTAAGTCCACATCAGACAACTCTTAAAATTTCCTGGTCAGATTTGTACAATATCTTAGCCTGATCTTACaagaaaaatgtaactttttttacgttttgtcagtttaatggctaattcgtacaagttcaatCGTGCGAAAATTTCGCAAAAATCGCCCCTAAATACAACCaccattgggggatgagcaaatcctactaaactgtacaaatgagattgtaggAATTAATacgtattagccactaaatcaaaaagttatgaattgctatgagattgtgttggatatctTGACTCTACactttaaatgaagaaaaaaaagacaatttgttctccaaattgaatgaataaaattgaGAATTAGGAGAGAAAAAgtcatgattattttttttttaacctatgGTAAAACTAGGCTTTCTTtataaacccaggctcattctgaaaacataccgctatatacatttctggagagtgccaaatacgtcccagcaGGTGCGTTTTTttggagatctcaaatttctctcgtgagtgtcATTCGCTCATGCTGTTCTCGCAAAAATCCACCAGGggacgctgtcgactgactgactgactgactgactaattgaCTGATCGACggacccatcctcctccttccctaatcccaaccaacagtgtattcaaaagcacagattgactcgcCCACCAACTTTCCTAAACCAAACTAACAATTTTAaacagcaatccagaaaaagaaaagccctagcagcagcctgatttttaccacgttttcagattttaccacattcttaccctgttatttacttgtttattttattttttggcttctgttttagtCTAACACCGAATTCAAACCCCGTTGTCCTGGTCAACTCTGTGTGTTTCAAGTCTGTCGATGAacggtgagctactggacaaattggtaacagtgggaaagctgtccatacgtaggtaagcggtcagctggtaagcacgaaaaggaacagcatcatagccgtagcgttcattttaaagatgaaatccaGCCATACATACATCTGGCTACAAaaatcgcgatctccagaaatgtacatagagctacaatttcagaatgagcctatgttgtccaTTATACAGAAAAAGAATAATGTACAGAATTTAAATCAAGACAAAGGATTTCAGCAGCAGGGCgtttaatatataacaaatacaaGACACGCAACAAGCTATAATGTTTACATCATGTAATGTTTCTATGACGAATTTCAATTTCAaccaaacaatatttaaaaaagaagaaaaaaaaaatcaacaagccTGAAGGCTTTAATCTAGTAATAATCTAGTAATGCCTTTTTTGAAAGTGAGTGTGTCTCTAAGATATCTGAATAATTCATACTGATCCTTCTCTCACCAtggatattatttattaaggatGCTGTGAAAAGCACAGTTACCATAAATCATTTAACAATGCCTCACATGTCTTTGCCAAATGTACATTCATAGTCTCAGAGAAATCACAAAATCCAGATCAATCCTTGAGCACAATATACTGATGTTGATATACATGGAGGAGGTGGGAAACGCAATAGTTaatgcaagacactgcaggtgaaaaggaaaatgaaaacaaaccaaCTAGGAGTTTTACAATTTCCCCGTTGACTGATTACATTTATTCTATTTAGAGTtctctaattttttttctttaaatatgcaaatcagGTCATGTTTAATGAAATAagcactaatttgcatacattgtttgcacaaatatttaaaaaactagaTATAGGTTTCAATTTCTTGGTTTGTTTTCTGACAaaggttttgatttttttttaattaatccatAATTTAGAAAATGCAGCTTTGCAGgtatttaacagattttttttccatttttttttgtagaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaaatatatataatatgtaaaaaaattcaGGCCAATTATGTGCAGCTGATTTCAGTGCTATCACTCAGTTGAATGGGtggaaggctgttatcatccatcggCATGGTAAATCAGCTATAGATAACACACTGCTGTGGCTggaagttatttattatttatattatgtattaaatttcccattaattgtattttatttacgtcTTATTAActttcctggaggtccagtgtcctgcagattttagctccaaccctcaACAAACATACCCAAACAagttaatcaaggtcttactaggtacacttgaaacacccaggtaggtgtgttgaggcaagttggagctaaacccaggaggacaccggacctccaggaacgagattggtgacccctggtctaccccaaccctaaacctaacagtcacagtaatgtaaaaacagatctggatctggagtcttctctattagtatagctgattaaccatgtggatggaggATAACCGCCtactgagcctaccagtaggtgcagaaggcccctactggcccatgtCTATCAGATGATAaacactgataatgcccattcaatctaGTAATACCATTCGAAGCGGGTGATTACGTATGAATATATGTCCCAGGAAAAACtttcagaatatagatatgaacAAAACTAATGCTTAGTGTATGTATGTGGGAGAAAAACaatatttgaaagaaaacagCACTTAAAAATGTGCATTGCATTAAATATTAACAGCTACAAATAAATATAGAAAGATAAAGACTgataaaagaaacacaaatatattttagatttaacAAACCTGAATCAGTTATGTGCATTTGTCCTGCACAACACGaccaaaaaaagccaaaaaaaaaaaaaaaaaaaacgagaggTGTCTgtatgcagacctggtgcagtgcaatctgtgtTGCATCCAATGCTATTTAATGCGCtgacctaaccccaccccttacagtgacgtcactagctccattgagtgcattgtgtctgacattgcatcactgagatatgcagtctcaacttgcatcaaggctgcatccatataccattaaaaaaacaaagctcAAAATCTTTTGACAggcttatggaaaaaaaaaaaaacaagtaaacagtttttgcctgcagtgtcttgcctaaAGGACAACAAATACTGTGTAAGTATTCTGAGTGTATATTTTGGAAAAAATAGGGTTGTGTTTGTAAATTACGTATTGAGGGAAACTGGCAAGTCCAGTCATTTTTTATGGTGAATCTTAGTGTTTTAATGGTATAAAAGCATTTGAACAAAGCCAAAAGAATTAATCCCTTTAGGTAGGTGGGAAAGTGTTGTATTGGTTGTGACATTTCTGATGAACTGTGGATCGGGTTTTGATTGAAAACAGTGGCGAAGACGTTTTAAACACCACACCGAGATTCATGTTCAGATCTGAAAATGTTTTAGAGAGGATTAAGGTGGAAAAAAGAGCACAAGTACATAAAAGCATCAAGTGTTTTGTCACGTTTGGAGAGAGACATTTGTACAAAAGTTGCCATTTTCTTTGGCAGCCGATGTAGCAccactttttacatttattttggggTATGAACTGTTTTTACTGGTTCATTTCATAATTACAGCTGGACAATACAGGTGTCAGTGTCTCGCATGCcatcatatttattaatttcagtgtattTAGATTGTGtccattttttaaatgacttttattttatgaaataaaatgttaGTAGCATTTAATCATGATGTACTtctttattaatatgattttaaaTTGATAATCCCTTCGGGCTTCATCTGAGTGCATGCTCAGTGTGTACTCAGatgaaaaataatcatatttct

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-8 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000027394

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066210 True 8311 mRNA 0.39 4 32722227 32749591

Neighbor

gene id symbol gene type direction distance location
XLOC_033845 slc39a13 coding upstream 6208 32693890 ~ 32716019 (+)
XLOC_033844 AL929252.1 coding upstream 40472 32681640 ~ 32681755 (+)
XLOC_033843 si:ch73-314g15.3 coding upstream 77027 32629674 ~ 32645200 (+)
XLOC_033842 fshb coding upstream 109667 32605705 ~ 32612560 (+)
XLOC_033841 BX511109.1 coding upstream 231077 32475343 ~ 32491150 (+)
XLOC_033847 tssc4 coding downstream 148132 32897723 ~ 32899843 (+)
XLOC_033848 ano9b coding downstream 152067 32901658 ~ 32924520 (+)
XLOC_033849 kcnc1a coding downstream 278861 33028452 ~ 33088144 (+)
XLOC_033850 zgc:153219 coding downstream 381048 33130639 ~ 33143009 (+)
XLOC_033851 itln2 coding downstream 395938 33145529 ~ 33148307 (+)
XLOC_033840 NA non-coding upstream 249289 32462643 ~ 32472938 (+)
XLOC_033838 NA non-coding upstream 550469 32170199 ~ 32171758 (+)
XLOC_033836 NA non-coding upstream 746267 31927988 ~ 31975960 (+)
XLOC_033853 BX571811.1 non-coding downstream 419328 33168919 ~ 33171622 (+)
XLOC_033856 NA non-coding downstream 601591 33351182 ~ 33352586 (+)
XLOC_033859 BX511006.1 non-coding downstream 1103597 33853188 ~ 33853307 (+)
XLOC_033860 NA non-coding downstream 1199693 33949284 ~ 33955326 (+)
XLOC_033861 CR927368.1 non-coding downstream 1330593 34080184 ~ 34080298 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_06698615_06712459 NA coding CI01000026 null 6698224 ~ 6712852 (+)
bowfin (Amia calva) AMCG00007167 LOC106587439,LOC106587479,LOC104919254 coding CM030123.1 CM030123.1 5826625 ~ 5841867 (-)