XLOC_003379


Basic Information

Item Value
gene id XLOC_003379
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17930273 ~ 17932158 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008398
tatagctagatagacagacagacagacagacctggTCTgtgttaggattttttttttttttcagctaatggagagcaggcagaagagggagaTTCACAAGAGAAATGGTGGAcatttttctggaaaaaaaatgcaGGAGAACAGCAGGTGGGGTTTTGCTGGGGTGGTCTTTGTCTTTTGCAGGTTGGAGGGgagcagaagaaggaaactcacaaggGGAACGGTGGAGATATACttgaagacctggagctcagAAAGCAGGTAGAACGGCTTGAACAGACTGAACAGTGGTGTTAGTTTCTAATGAAATGTATTAAGATCAATtaaagacctgatatctttctcttagacagattggcatggagcatgtggagcAACAGGGAAACACATGTCAGTGGTAGATGAAACTCAAACTACAAAGAATGGTATTAAGATTAATTAATGACTTGATatctttttgttgtattttacggATTGGAATGGACCACATGGAGAAAAaaaggaatcacacacctcagcaatgactagaTGGTcaggaattatttattttttgattgatgggtgcatggatggatgtccttccaggATGAAGGAGTGGTGGTTGGTACAGATGGTCAAttaggccttgtctgtgtcaggCTTTTTATTTTTCAGGTAATGGAGAGAGAGCAGGCAGGAGAGGGAGACTTACAAGAGCATCAGTGAAGAACAGCATGTAGGGCTCTGTCAGTGCTGTCTATTGctattATCTTTGCAGgttggagtggagcagaagaagGAGATTTACAAGGGGAATGGTGGAGATATACttgaagacctggagctcagGATGCAGGTCGGAATGGACCATATGGGGAAAaagggaatcacacacctcagcatcGACTGGATGGTcagaaatttattttaaagaaatgacTGACAGATTGATGGGTGTGTGGATGGACGTCCTTCCAAAATGTAGGAGTGGTGGTTGGTATAGTAATTATGTCTTATctgtgtgagtttttttttttttttttcaggtaattaagagagagcaggcagaagagggagactcaAAAGAGCATTGGTGGAAAACAGCTGGTAGGTCTTATAGATACAGATACAGccttatggatggatggatggataaagctTTGTTAGTATTGTCTTTAACTTTTACAgactggagtgcagcatgtggagacaaataggaatcacacacctcagcaatgactagaCACTGATTGTCAGGAATATCCTTTAAAAACAGAAGGATGtgtgcatggatggatgtccttccaagaggaagggggtagtggtgggcatagattgttagatgtcttgtctgtggcaGTTATTTACACTGTAGGTAATAAAACCACAACAGgcagaagaaggagactcacaGGCGCAATGGTGAATATTTTTTCTGAACAACGCTGGAGATTTATTGTTTATTGCTGAAGATTAGCCAGCAAGTAAAGctctgttagtcttgtttttgtcttttgcagtTTATACTGGGGCATGTGAAGAAATGGGaatcacacctcagcaatgactgcaaACTGATGGTCTGGTTAGGTAGCTTTtgcattgatggatggatggatggatggatggctggttAGAT
>TCONS_00008397
tatagctagatagacagacagacagacagacctggTCTgtgttaggattttttttttttttcagctaatggagagcaggcagaagagggagaTTCACAAGAGAAATGGTGGAcatttttctggaaaaaaaatgcaGGAGAACAGCAGGTGGGGTTTTGCTGGGGTGGTCTTTGTCTTTTGCAGGTTGGAGGGgagcagaagaaggaaactcacaaggGGAACGGTGGAGATATACttgaagacctggagctcagAAAGCAGGTAGAACGGCTTGAACAGACTGAACAGTGGTGTTAGTTTCTAATGAAATGTATTAAGATCAATtaaagacctgatatctttctcttagacagattggcatggagcatgtggagcAACAGGGAAACACATGTCAGTGGTAGATGAAACTCAAACTACAAAGAATGGTATTAAGATTAATTAATGACTTGATatctttttgttgtattttacggATTGGAATGGACCACATGGAGAAAAaaaggaatcacacacctcagcaatgactagaTGGTcaggaattatttattttttgattgatgggtgcatggatggatgtccttccaggATGAAGGAGTGGTGGTTGGTACAGATGGTCAAttaggccttgtctgtgtcaggCTTTTTATTTTTCAGGTAATGGAGAGAGAGCAGGCAGGAGAGGGAGACTTACAAGAGCATCAGTGAAGAACAGCATGTAGGGCTCTGTCAGTGCTGTCTATTGGTGTGTACCAAATCGCATACTTTTATACTGTTCTCTGCCATTTtgctgtataaatagtgtaagtagtgtgtttacactgaaatATTCATTTTGTCCTAAGTAGATGCTGTTAAGtgagtaagtgcataagtacatagtgtgaCAGttcatagtgtgccatttgggacacagctattATCTTTGCAGgttggagtggagcagaagaagGAGATTTACAAGGGGAATGGTGGAGATATACttgaagacctggagctcagGATGCAGGTCGGAATGGACCATATGGGGAAAaagggaatcacacacctcagcatcGACTGGATGGTcagaaatttattttaaagaaatgacTGACAGATTGATGGGTGTGTGGATGGACGTCCTTCCAAAATGTAGGAGTGGTGGTTGGTATAGTAATTATGTCTTATctgtgtgagtttttttttttttttttcaggtaattaagagagagcaggcagaagagggagactcaAAAGAGCATTGGTGGAAAACAGCTGGTAGGTCTTATAGATACAGATACAGccttatggatggatggatggataaagctTTGTTAGTATTGTCTTTAACTTTTACAgactggagtgcagcatgtggagacaaataggaatcacacacctcagcaatgactagaCACTGATTGTCAGGAATATCCTTTAAAAACAGAAGGATGtgtgcatggatggatgtccttccaagaggaagggggtagtggtgggcatagattgttagatgtcttgtctgtggcaGTTATTTACACTGTAGGTAATAAAACCACAACAGgcagaagaaggagactcacaGGCGCAATGGTGAATATTTTTTCTGAACAACGCTGGAGATTTATTGTTTATTGCTGAAGATTAGCCAGCAAGTAAAGctctgttagtcttgtttttgtcttttgcagtTTATACTGGGGCATGTGAAGAAATGGGaatcacacctcagcaatgactgcaaACTGATGGTCTGGTTAGGTAGCTTTtgcattgatggatggatggatggatggatggctggttAGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008398 False 1618 lncRNA 0.42 3 17930273 17932158
TCONS_00008397 True 1789 lncRNA 0.41 2 17930273 17932158

Neighbor

gene id symbol gene type direction distance location
XLOC_003378 CR589944.3 coding upstream 10260 17919143 ~ 17920013 (+)
XLOC_003377 BX571952.1 coding upstream 416641 17440591 ~ 17513632 (+)
XLOC_003376 CR631124.1 coding upstream 601592 17328565 ~ 17328681 (+)
XLOC_003374 NA coding upstream 760096 17093078 ~ 17170177 (+)
XLOC_003375 CR769769.1 coding upstream 788386 17137848 ~ 17141887 (+)
XLOC_003380 NA coding downstream 19405 17951563 ~ 17952558 (+)
XLOC_003381 NA coding downstream 24683 17956841 ~ 17963453 (+)
XLOC_003382 rpusd4 coding downstream 32531 17964689 ~ 18081864 (+)
XLOC_003383 si:ch211-14i3.2 coding downstream 91307 18023465 ~ 18030903 (+)
XLOC_003384 zgc:175135 coding downstream 105571 18037729 ~ 18039583 (+)
XLOC_003369 CR854846.2 misc upstream 1807191 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 5218277 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 5236010 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 5244674 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 5250245 12679732 ~ 12680028 (+)
XLOC_003392 BX296530.1 non-coding downstream 744284 18676442 ~ 18676557 (+)
XLOC_003393 NA non-coding downstream 770204 18702362 ~ 18708059 (+)
XLOC_003394 NA non-coding downstream 808869 18741027 ~ 18742103 (+)

Expression


Co-expression Network