RNA id: TCONS_00008398


Basic Information

Item Value
RNA id TCONS_00008398
length 1618
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_003379
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17930273 ~ 17932158 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatagctagatagacagacagacagacagacctggTCTgtgttaggattttttttttttttcagctaatggagagcaggcagaagagggagaTTCACAAGAGAAATGGTGGAcatttttctggaaaaaaaatgcaGGAGAACAGCAGGTGGGGTTTTGCTGGGGTGGTCTTTGTCTTTTGCAGGTTGGAGGGgagcagaagaaggaaactcacaaggGGAACGGTGGAGATATACttgaagacctggagctcagAAAGCAGGTAGAACGGCTTGAACAGACTGAACAGTGGTGTTAGTTTCTAATGAAATGTATTAAGATCAATtaaagacctgatatctttctcttagacagattggcatggagcatgtggagcAACAGGGAAACACATGTCAGTGGTAGATGAAACTCAAACTACAAAGAATGGTATTAAGATTAATTAATGACTTGATatctttttgttgtattttacggATTGGAATGGACCACATGGAGAAAAaaaggaatcacacacctcagcaatgactagaTGGTcaggaattatttattttttgattgatgggtgcatggatggatgtccttccaggATGAAGGAGTGGTGGTTGGTACAGATGGTCAAttaggccttgtctgtgtcaggCTTTTTATTTTTCAGGTAATGGAGAGAGAGCAGGCAGGAGAGGGAGACTTACAAGAGCATCAGTGAAGAACAGCATGTAGGGCTCTGTCAGTGCTGTCTATTGctattATCTTTGCAGgttggagtggagcagaagaagGAGATTTACAAGGGGAATGGTGGAGATATACttgaagacctggagctcagGATGCAGGTCGGAATGGACCATATGGGGAAAaagggaatcacacacctcagcatcGACTGGATGGTcagaaatttattttaaagaaatgacTGACAGATTGATGGGTGTGTGGATGGACGTCCTTCCAAAATGTAGGAGTGGTGGTTGGTATAGTAATTATGTCTTATctgtgtgagtttttttttttttttttcaggtaattaagagagagcaggcagaagagggagactcaAAAGAGCATTGGTGGAAAACAGCTGGTAGGTCTTATAGATACAGATACAGccttatggatggatggatggataaagctTTGTTAGTATTGTCTTTAACTTTTACAgactggagtgcagcatgtggagacaaataggaatcacacacctcagcaatgactagaCACTGATTGTCAGGAATATCCTTTAAAAACAGAAGGATGtgtgcatggatggatgtccttccaagaggaagggggtagtggtgggcatagattgttagatgtcttgtctgtggcaGTTATTTACACTGTAGGTAATAAAACCACAACAGgcagaagaaggagactcacaGGCGCAATGGTGAATATTTTTTCTGAACAACGCTGGAGATTTATTGTTTATTGCTGAAGATTAGCCAGCAAGTAAAGctctgttagtcttgtttttgtcttttgcagtTTATACTGGGGCATGTGAAGAAATGGGaatcacacctcagcaatgactgcaaACTGATGGTCTGGTTAGGTAGCTTTtgcattgatggatggatggatggatggatggctggttAGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006628 lncRNA upstream 10260 17919143 ~ 17920013 (+) True XLOC_003378
TCONS_00008579 lncRNA upstream 760096 17093078 ~ 17170177 (+) True XLOC_003374
TCONS_00006613 lncRNA upstream 788386 17137852 ~ 17141887 (+) False XLOC_003375
TCONS_00006614 lncRNA upstream 788391 17138440 ~ 17141882 (+) False XLOC_003375
TCONS_00008580 lncRNA upstream 788511 17138584 ~ 17141762 (+) False XLOC_003375
TCONS_00008581 lncRNA downstream 19405 17951563 ~ 17952558 (+) True XLOC_003380
TCONS_00008582 lncRNA downstream 24683 17956841 ~ 17963453 (+) False XLOC_003381
TCONS_00006629 lncRNA downstream 24730 17956888 ~ 17963453 (+) False XLOC_003381
TCONS_00008583 lncRNA downstream 25121 17957279 ~ 17960090 (+) True XLOC_003381
TCONS_00006646 lncRNA downstream 770204 18702362 ~ 18708059 (+) False XLOC_003393
TCONS_00006610 mRNA upstream 1342229 16574625 ~ 16588044 (+) True XLOC_003373
TCONS_00006608 mRNA upstream 1605698 16216909 ~ 16324575 (+) False XLOC_003372
TCONS_00006609 mRNA upstream 1647998 16216964 ~ 16282275 (+) True XLOC_003372
TCONS_00006606 mRNA upstream 1751083 16166117 ~ 16179190 (+) False XLOC_003371
TCONS_00006631 mRNA downstream 52009 17984167 ~ 17994777 (+) False XLOC_003382
TCONS_00006632 mRNA downstream 52010 17984168 ~ 18081864 (+) False XLOC_003382
TCONS_00006633 mRNA downstream 52196 17984354 ~ 18081744 (+) True XLOC_003382
TCONS_00006634 mRNA downstream 91307 18023465 ~ 18030903 (+) True XLOC_003383
TCONS_00006635 mRNA downstream 105571 18037729 ~ 18039583 (+) True XLOC_003384
TCONS_00006627 other upstream 416641 17441957 ~ 17513632 (+) True XLOC_003377
TCONS_00006626 other upstream 418536 17441887 ~ 17511737 (+) False XLOC_003377
TCONS_00006625 other upstream 429485 17441887 ~ 17500788 (+) False XLOC_003377
TCONS_00006623 other upstream 435730 17441307 ~ 17494543 (+) False XLOC_003377
TCONS_00006630 other downstream 32531 17964689 ~ 17984774 (+) False XLOC_003382
TCONS_00006645 other downstream 744284 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006652 other downstream 1127941 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006668 other downstream 2100908 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006677 other downstream 3120070 21052228 ~ 21052344 (+) True XLOC_003409

Expression Profile

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