RNA id: TCONS_00006633


Basic Information

Item Value
RNA id TCONS_00006633
length 1077
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_003382
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17964689 ~ 18081864 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGACACGCACGTGAGGTGACATTTGCGAGACTCATGAGGACATTTGCCGCAGTTTCAGACACCCAGACCGTCGCTTCAAAACACAAAACAGCACCGAAAGCAGCAGACATCGCCAACAGACTccggaaagagaaagagaaagaaaaagatgaCAAAAACGAGGTTCCGGTGTCCCCTCTCCAGTCCAGAGTGAATGAACTCAAGCAGTTTTCTCAGCAGCTGCAGTCTGTGCACCCGAGTGTGTTCGCAAAAGCCCTTTACAGGAGCTCCCTTTATGAAGACCAAAACATAATCGCCATAAATAAACCATATGACGTTCCTTTGCATAATATAAATGGCATCAGAAACAGTATCGCCGAGTGTCTGCCTTTGCTGGCAAAGATCACGGATAATATGCGACCTGGATCACAGTTACATCTTTGCCACAAACTGGAAAAAGAAACTACTGGAGTTTTGATCCTGGCTAAAACAGAGGAAGCTGCTGAACATGTCCAAACGCTCATCCAATCACACAAAGTGGAAATGAAATACTTGGCAATCACTGTAGGTGTGCCTGTTCCATCTGAAGGAGTGATAGACATTCCTGTTATAGAGAGAGCAGTTGTGGGACCTCAGCCGCACTTTAAGATGGCTCTGAGTCCGCTGTTTAAAGTGAATGAGGATGGAGATGGAGTGACGAGAGTGCGAGCTCACAGACAGGCACATGCTGCAGTCACACGGTATCAAGTTCTGGACAACACCAGCGGCTGCAGTTTAGTGGAACTCCAGCCTCTCACAGgtgtgaaAAACCAACTTCGAGTGCACATGGCTTTAGCGTTGACCTGCCCCATTCTTGGCGACCATAAATATTCCCACTGGAGCAAACTAGCACCCCAGAAGCTGCCTGAGGGTACGCTGCGCCGGCTGGGCCTGGTTCAGAGTAAAACACGATACCTGCCTCTTCATCTACACTCCCGAAGGATCGTCCTGCCAGGGTTCAAAGGTCACAGAGACATTACGGTGTCCTGTCCCCTTCCCAAATACTTCATCAACGCATTGAAGAGGCTGGAGATCCCACTGCCGGCAAAAGAATAA

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0000455 enzyme-directed rRNA pseudouridine synthesis biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003723 RNA binding molecular_function
GO:0016853 isomerase activity molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-040801-238 Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis and tRNA processing. Predicted to be located in mitochondrial matrix. Orthologous to human RPUSD4 (RNA pseudouridine synthase D4).

Ensembl:

ensembl_id ENSDART00000179986

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008582 lncRNA upstream 20901 17956841 ~ 17963453 (+) False XLOC_003381
TCONS_00006629 lncRNA upstream 20901 17956888 ~ 17963453 (+) False XLOC_003381
TCONS_00008583 lncRNA upstream 24264 17957279 ~ 17960090 (+) True XLOC_003381
TCONS_00008581 lncRNA upstream 31796 17951563 ~ 17952558 (+) True XLOC_003380
TCONS_00008398 lncRNA upstream 52196 17930273 ~ 17932158 (+) False XLOC_003379
TCONS_00006646 lncRNA downstream 620618 18702362 ~ 18708059 (+) False XLOC_003393
TCONS_00008584 lncRNA downstream 622385 18704129 ~ 18708059 (+) True XLOC_003393
TCONS_00008585 lncRNA downstream 659283 18741027 ~ 18742103 (+) True XLOC_003394
TCONS_00006647 lncRNA downstream 751169 18832913 ~ 18833246 (+) True XLOC_003395
TCONS_00008586 lncRNA downstream 2806366 20888110 ~ 20890881 (+) True XLOC_003405
TCONS_00006610 mRNA upstream 1396310 16574625 ~ 16588044 (+) True XLOC_003373
TCONS_00006608 mRNA upstream 1659779 16216909 ~ 16324575 (+) False XLOC_003372
TCONS_00006609 mRNA upstream 1702079 16216964 ~ 16282275 (+) True XLOC_003372
TCONS_00006606 mRNA upstream 1805164 16166117 ~ 16179190 (+) False XLOC_003371
TCONS_00006637 mRNA downstream 48556 18130300 ~ 18132066 (+) True XLOC_003386
TCONS_00006638 mRNA downstream 75516 18157260 ~ 18158883 (+) True XLOC_003387
TCONS_00006639 mRNA downstream 94149 18175893 ~ 18177499 (+) True XLOC_003388
TCONS_00006640 mRNA downstream 101476 18183220 ~ 18200701 (+) True XLOC_003389
TCONS_00006641 mRNA downstream 124022 18205766 ~ 18243702 (+) False XLOC_003390
TCONS_00006627 other upstream 470722 17441957 ~ 17513632 (+) True XLOC_003377
TCONS_00006626 other upstream 472617 17441887 ~ 17511737 (+) False XLOC_003377
TCONS_00006625 other upstream 483566 17441887 ~ 17500788 (+) False XLOC_003377
TCONS_00006623 other upstream 489811 17441307 ~ 17494543 (+) False XLOC_003377
TCONS_00006645 other downstream 594698 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006652 other downstream 978355 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006668 other downstream 1951322 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006677 other downstream 2970484 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006686 other downstream 3568778 21650522 ~ 21650638 (+) True XLOC_003418

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_04758962_04763056.mRNA True 1074 mRNA 0.48 7 CI01000058 4758962 ~ 4763056 (-)