XLOC_003390 (tmcc1b)


Basic Information

Item Value
gene id XLOC_003390
gene name tmcc1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18205766 ~ 18244561 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006641
CATGTGATAATCCTGCTTTTATGAGGGGCAAGTTAACTGAAGTGTCAAGAGAACAGTTTACACTGCATTGAGGGACTGGCGGTTTCTCTATGCAAGAGAGACAGTTTTGGATTTCCACTTAGATTTATCCACAGTATCAGATTTCTGTGTTGAGAAGACTGAGCAGGATGACTGGAACTGAAGCCAACTCTGAACTGCTGTAAGCCAGTGGAGGCCAGGCTGGACTAATGACGAGCATGACTTTGCGCCAAACCACAGATGCATGTACGCTCTCAGAGTCCACCTGACTGCTGCCACCCTCTGCTTCCTGGCTTTTGAAACAGCCTATCAGGGGGCTGGTGGAGGCGGGGCTTAGCTAGACCCCTGTGCTGACCCTCTGAGTGAGACTGGCGCCTCCTGATGGACCAGGGTGGTAGCGAGCAGCCTGGGGCGGAGGAGCCAGACTCTGGGGGTCGAGCAGAGCGGGAGGTGAGCAGGAGGGCTTCCGAGCCTGATCACGGCCTGTCCAAAATTACCCACAATGCTTTGGAGAACATGGGCGCGCTGGGCCATGGCCTGAAGCACTTCTTCCAACCCCAGCGCAGGCGTTCATCCGTCTCGCCACACGACTACACCTCTTCTTCCACAGGCCCCATCCTTGAACCTCCAGAAGTGGGGCCAGAGTTGGGGGAAGCGCAAGGCATCACGGTCGCCCCTAACTCTGACCCTCACACTTCCGCCCCCCCTGCAGCTTTGAGTCGCGTGCTGCAGCAGATTCGAGGCCCCCCCATGATGAAGAGAGGGACCAGCCTGCAGAGCCGCCGCAGCAAGGCAGGGGGGGTAGGGGAGGCCCCCCAAAAAGGCAGTCCTCAGATCCACAGGCGCAGTACCCAGGACCCATTGCTGCAGGCAGGACGGCCACGCTCCTCTTCTACCACCGATACACCCAGCAGCCCAGCTTTGGTGGACATGTTGCTGACCTCAGGGTACCACTCCACCGAGGAGGCTGATCGGCAAGATCGTTTGGAGGTGTCGGGCCCTGCAGTGTCTCCCAACGCTCTGTCTACATGCTCAGATGGCGGTCAGTACGGTGTGGATTCAGTGGATGGCACCCTGGATCCTCAGCGCACAAAGCAGGCCATTGCTCAGCTACAGCAGAAGATTCTTAAACTCACAGAGCAGATCAAAATCGAACAAACAGCAAGAGACGACAATGTAGCCGAGTACTTGAAGCTGGCAAACAACGCAGACAAACAGCAGAGCACTCGCATCAAGCAGGTGTTCGAGAAGAAGAACCAGAAGTCTGCGCAGACCATCCAGCAGCTGCAGAGGAAGCTGGAGCATTATCATCGCAAGCTCCGAGAGGTGGAGCACAATGGAATACCACGCCAGCCCAAAGATGTCCTGCGAGACATGCACCAGGGTCTGAAGGATGTGGGTGCCAAGGTAACCGGTGGCCTGTCCAGTATCTCTCAGGCCACTCACTCAGCTGCAGGAGCAGTCGTGTCCAAGCCTCGTGAGTTTGCCTCTCTAATTCGCAACAAGTTAGGAAGTACAGAAAACATCCCTGCCCTAAAAGACTCTCTGGATGAACAGCAAGGGGATGATCCAGTATCAAGTACAGGAGTGGCAGGCACTAGGACCCCAGGGCCCGGGCAGCTGCAATCGAGCCCGAAATATGGCAGTGAGGACGACTGCTCCAGCGCTACATCAGGGTCAGCAGGAGCAAACAGCACAACGGGGGCTCCCGGAGGGCCTCCCAGCTCAAAGGGTAACACACTGGAGCATGGCCAGGGCTCTGGCTTCGACACACTGCTGCACGAGATCCAGGAACTGAAGGATAACCAGAGTCGACTAGAAGAATCTTTTGATAACCTGAAGAGTCACTATCAGAGAGACTACACGGATATTATGCAGGCCTTGCAGGAGGAGAGATTCAGGTGTGAGCGTCTGGAGGAGCAGTTGAATGATTTAACAGAACTGCATCAAAATGAGATTCTCAACTTGAAGCAAGAGCTTGCCAGCATGGAGGAGAAGATCGCTTACCAGTCTTATGAACGAGCTAGAGACATACAGGAGGCACTGGAGGCCTGTCAAACGCGCATCTCTAAGATGGAGCTtcaacagcagcagcaacaggTGGTTCAGTTGGAGGGTTTGGAAAACGCCACTGCACGCACTTTACTCGGCAAACTCATCAACGTGCTGCTGGCCGTCATGGCGGTCCTCCTAGTGTTCGTCTCGACGGTCGCAAACTGTGTAGTTCCACTGATGAAAACACGCAGCCGCACGCTTTCCACATTGCTCCTTGTTCTAGTGTTGGCTTTTCTGTGGCGGAATTGGGAAGCCATGTCGCAGTATGTTGACCGATTTTTGCTGCACCCTAGATGA
>TCONS_00006642
CGGGGCTTAGCTAGACCCCTGTGCTGACCCTCTGAGTGAGACTGGCGCCTCCTGATGGACCAGGGTGGTAGCGAGCAGCCTGGGGCGGAGGAGCCAGACTCTGGGGGTCGAGCAGAGCGGGAGGTGAGCAGGAGGGCTTCCGAGCCTGATCACGGCCTGTCCAAAATTACCCACAATGCTTTGGAGAACATGGGCGCGCTGGGCCATGGCCTGAAGCACTTCTTCCAACCCCAGCGCAGGCGTTCATCCGTCTCGCCACACGACTACACCTCTTCTTCCACAGGCCCCATCCTTGAACCTCCAGAAGTGGGGCCAGAGTTGGGGGAAGCGCAAGGCATCACGGTCGCCCCTAACTCTGACCCTCACACTTCCGCCCCCCCTGCAGCTTTGAGTCGCGTGCTGCAGCAGATTCGAGGCCCCCCCATGATGAAGAGAGGGACCAGCCTGCAGAGCCGCCGCAGCAAGGCAGGGGGGGTAGGGGAGGCCCCCCAAAAAGGCAGTCCTCAGATCCACAGGCGCAGTACCCAGGACCCATTGCTGCAGGCAGGACGGCCACGCTCCTCTTCTACCACCGATACACCCAGCAGCCCAGCTTTGGTGGACATGTTGCTGACCTCAGGGTACCACTCCACCGAGGAGGCTGATCGGCAAGATCGTTTGGAGGTGTCGGGCCCTGCAGTGTCTCCCAACGCTCTGTCTACATGCTCAGATGGCGGTCAGTACGGTGTGGATTCAGTGGATGGCACCCTGGATCCTCAGCGCACAAAGCAGGCCATTGCTCAGCTACAGCAGAAGATTCTTAAACTCACAGAGCAGATCAAAATCGAACAAACAGCAAGAGACGACAATGTAGCCGAGTACTTGAAGCTGGCAAACAACGCAGACAAACAGCAGAGCACTCGCATCAAGCAGGTGTTCGAGAAGAAGAACCAGAAGTCTGCGCAGACCATCCAGCAGCTGCAGAGGAAGCTGGAGCATTATCATCGCAAGCTCCGAGAGGTGGAGCACAATGGAATACCACGCCAGCCCAAAGATGTCCTGCGAGACATGCACCAGGGTCTGAAGGATGTGGGTGCCAAGGTAACCGGTGGCCTGTCCAGTATCTCTCAGGCCACTCACTCAGCTGCAGGAGCAGTCGTGTCCAAGCCTCGTGAGTTTGCCTCTCTAATTCGCAACAAGTTAGGAAGTACAGAAAACATCCCTGCCCTAAAAGACTCTCTGGATGAACAGCAAGGGGATGATCCAGTATCAAGTACAGGAGTGGCAGGCACTAGGACCCCAGGGCCCGGGCAGCTGCAATCGAGCCCGAAATATGGCAGTGAGGACGACTGCTCCAGCGCTACATCAGGGTCAGCAGGAGCAAACAGCACAACGGGGGCTCCCGGAGGGCCTCCCAGCTCAAAGGGTAACACACTGGAGCATGGCCAGGGCTCTGGCTTCGACACACTGCTGCACGAGATCCAGGAACTGAAGGATAACCAGAGTCGACTAGAAGAATCTTTTGATAACCTGAAGAGTCACTATCAGAGAGACTACACGGATATTATGCAGGCCTTGCAGGAGGAGAGATTCAGGTGTGAGCGTCTGGAGGAGCAGTTGAATGATTTAACAGAACTGCATCAAAATGAGATTCTCAACTTGAAGCAAGAGCTTGCCAGCATGGAGGAGAAGATCGCTTACCAGTCTTATGAACGAGCTAGAGACATACAGGAGGCACTGGAGGCCTGTCAAACGCGCATCTCTAAGATGGAGCTtcaacagcagcagcaacaggTGGTTCAGTTGGAGGGTTTGGAAAACGCCACTGCACGCACTTTACTCGGCAAACTCATCAACGTGCTGCTGGCCGTCATGGCGGTCCTCCTAGTGTTCGTCTCGACGGTCGCAAACTGTGTAGTTCCACTGATGAAAACACGCAGCCGCACGCTTTCCACATTGCTCCTTGTTCTAGTGTTGGCTTTTCTGTGGCGGAATTGGGAAGCCATGTCGCAGTATGTTGACCGATTTTTGCTGCACCCTAGATGACCTGCAGGGGCGCTGCTGTTGCTATGGTTTTATGAAGGGACTAGAGGGCGGAGACTTTGAATCAAAGATGAAGACTAACACTGCCTCAGTTGCACTTAGTACAGAGGGATGCGGCACAAGAGTGGCAGACACAGACAAAATCTTACAacctctttctcttttttttttcactgaaggagtgagtttgtttacattttgaagATCCTTTTTTCTCCCGTCAACATGAATTGCATTGCTGAGTTTCCGTTTATTTGTTGTTGGAAATGATGCAAGTCATGTCGTTCATTGTTTTCGTAACTATTGTTAGGATATACATTTATGCAATTTCCTGAGTCTTGTTTTGAATTGACTGGAGTGGTTTTAACATGCACTGGATGGAGATCTCTCTCCACGTTTTTAATACCATATTAACTGCTCTTTTCCCTCCTAACTTTAAGCCGTTTCTTTAATTTCTCTCCGTCGTCTCGCTCTTCCTCTTAAGTGCTTAACTTCAATTAATTTCCTGTGCTCATGGCTTCACTCTTCCTACTCAAAACCGTTTGCTGCTGTTTGGACTTCAATGCAGTTGTTGCTGAATGAAGGATTGGATGGATTCTGTTGGAGAAGAGGCGTCTGGAGTTGGGTTGAATAGGCCGAGGACCTGAAACACTCTTAAGCTGAGTCGGCCCCACTTCATCTCCGGCCCTGTGCCCTCAGAGAGGCACAGTCCCTGGGCATACGAACAGAATGAACATACTTGAAGAGCTAGAAATGCTCAATGACTCTCAGTGCTTCCGTACTGTTTCTTATAGCGACAATGAAATAGtcctttttagttttattttttattttttaaaatgaaattaataaatgctgtttt

Function

symbol description
tmcc1b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC1 (transmembrane and coiled-coil domain family 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-154 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC1 (transmembrane and coiled-coil domain family 1).

Ensembl:

ensembl_id ENSDARG00000060954

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006641 False 2370 mRNA 0.55 7 18205766 18243702
TCONS_00006642 True 2884 mRNA 0.52 5 18216404 18244561

Neighbor

gene id symbol gene type direction distance location
XLOC_003389 LO018315.6 coding upstream 5065 18183220 ~ 18200701 (+)
XLOC_003388 zgc:173545 coding upstream 28267 18175893 ~ 18177499 (+)
XLOC_003387 zgc:173545 coding upstream 46883 18157260 ~ 18158883 (+)
XLOC_003386 zgc:175135 coding upstream 73700 18130300 ~ 18132066 (+)
XLOC_003385 zgc:175135 coding upstream 150632 18053333 ~ 18055134 (+)
XLOC_003391 ncoa3 coding downstream 367605 18612166 ~ 18699569 (+)
XLOC_003392 BX296530.1 coding downstream 431881 18676442 ~ 18676557 (+)
XLOC_003393 NA coding downstream 457801 18702362 ~ 18708059 (+)
XLOC_003394 NA coding downstream 496466 18741027 ~ 18742103 (+)
XLOC_003395 CU207354.2 coding downstream 588352 18832913 ~ 18833246 (+)
XLOC_003369 CR854846.2 misc upstream 2082684 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 5493770 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 5511503 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 5520167 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 5525738 12679732 ~ 12680028 (+)
XLOC_003381 NA non-coding upstream 242313 17956841 ~ 17963453 (+)
XLOC_003380 NA non-coding upstream 253208 17951563 ~ 17952558 (+)
XLOC_003379 NA non-coding upstream 273608 17930273 ~ 17932158 (+)
XLOC_003378 CR589944.3 non-coding upstream 285753 17919143 ~ 17920013 (+)
XLOC_003377 BX571952.1 non-coding upstream 692134 17440591 ~ 17513632 (+)
XLOC_003402 BX276115.1 non-coding downstream 1788505 20033066 ~ 20033185 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_04702204_04717881 TMCC1B coding CI01000058 null 4699988 ~ 4717881 (-)