RNA id: TCONS_00006642


Basic Information

Item Value
RNA id TCONS_00006642
length 2884
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_003390
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18205766 ~ 18244561 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGGGCTTAGCTAGACCCCTGTGCTGACCCTCTGAGTGAGACTGGCGCCTCCTGATGGACCAGGGTGGTAGCGAGCAGCCTGGGGCGGAGGAGCCAGACTCTGGGGGTCGAGCAGAGCGGGAGGTGAGCAGGAGGGCTTCCGAGCCTGATCACGGCCTGTCCAAAATTACCCACAATGCTTTGGAGAACATGGGCGCGCTGGGCCATGGCCTGAAGCACTTCTTCCAACCCCAGCGCAGGCGTTCATCCGTCTCGCCACACGACTACACCTCTTCTTCCACAGGCCCCATCCTTGAACCTCCAGAAGTGGGGCCAGAGTTGGGGGAAGCGCAAGGCATCACGGTCGCCCCTAACTCTGACCCTCACACTTCCGCCCCCCCTGCAGCTTTGAGTCGCGTGCTGCAGCAGATTCGAGGCCCCCCCATGATGAAGAGAGGGACCAGCCTGCAGAGCCGCCGCAGCAAGGCAGGGGGGGTAGGGGAGGCCCCCCAAAAAGGCAGTCCTCAGATCCACAGGCGCAGTACCCAGGACCCATTGCTGCAGGCAGGACGGCCACGCTCCTCTTCTACCACCGATACACCCAGCAGCCCAGCTTTGGTGGACATGTTGCTGACCTCAGGGTACCACTCCACCGAGGAGGCTGATCGGCAAGATCGTTTGGAGGTGTCGGGCCCTGCAGTGTCTCCCAACGCTCTGTCTACATGCTCAGATGGCGGTCAGTACGGTGTGGATTCAGTGGATGGCACCCTGGATCCTCAGCGCACAAAGCAGGCCATTGCTCAGCTACAGCAGAAGATTCTTAAACTCACAGAGCAGATCAAAATCGAACAAACAGCAAGAGACGACAATGTAGCCGAGTACTTGAAGCTGGCAAACAACGCAGACAAACAGCAGAGCACTCGCATCAAGCAGGTGTTCGAGAAGAAGAACCAGAAGTCTGCGCAGACCATCCAGCAGCTGCAGAGGAAGCTGGAGCATTATCATCGCAAGCTCCGAGAGGTGGAGCACAATGGAATACCACGCCAGCCCAAAGATGTCCTGCGAGACATGCACCAGGGTCTGAAGGATGTGGGTGCCAAGGTAACCGGTGGCCTGTCCAGTATCTCTCAGGCCACTCACTCAGCTGCAGGAGCAGTCGTGTCCAAGCCTCGTGAGTTTGCCTCTCTAATTCGCAACAAGTTAGGAAGTACAGAAAACATCCCTGCCCTAAAAGACTCTCTGGATGAACAGCAAGGGGATGATCCAGTATCAAGTACAGGAGTGGCAGGCACTAGGACCCCAGGGCCCGGGCAGCTGCAATCGAGCCCGAAATATGGCAGTGAGGACGACTGCTCCAGCGCTACATCAGGGTCAGCAGGAGCAAACAGCACAACGGGGGCTCCCGGAGGGCCTCCCAGCTCAAAGGGTAACACACTGGAGCATGGCCAGGGCTCTGGCTTCGACACACTGCTGCACGAGATCCAGGAACTGAAGGATAACCAGAGTCGACTAGAAGAATCTTTTGATAACCTGAAGAGTCACTATCAGAGAGACTACACGGATATTATGCAGGCCTTGCAGGAGGAGAGATTCAGGTGTGAGCGTCTGGAGGAGCAGTTGAATGATTTAACAGAACTGCATCAAAATGAGATTCTCAACTTGAAGCAAGAGCTTGCCAGCATGGAGGAGAAGATCGCTTACCAGTCTTATGAACGAGCTAGAGACATACAGGAGGCACTGGAGGCCTGTCAAACGCGCATCTCTAAGATGGAGCTtcaacagcagcagcaacaggTGGTTCAGTTGGAGGGTTTGGAAAACGCCACTGCACGCACTTTACTCGGCAAACTCATCAACGTGCTGCTGGCCGTCATGGCGGTCCTCCTAGTGTTCGTCTCGACGGTCGCAAACTGTGTAGTTCCACTGATGAAAACACGCAGCCGCACGCTTTCCACATTGCTCCTTGTTCTAGTGTTGGCTTTTCTGTGGCGGAATTGGGAAGCCATGTCGCAGTATGTTGACCGATTTTTGCTGCACCCTAGATGACCTGCAGGGGCGCTGCTGTTGCTATGGTTTTATGAAGGGACTAGAGGGCGGAGACTTTGAATCAAAGATGAAGACTAACACTGCCTCAGTTGCACTTAGTACAGAGGGATGCGGCACAAGAGTGGCAGACACAGACAAAATCTTACAacctctttctcttttttttttcactgaaggagtgagtttgtttacattttgaagATCCTTTTTTCTCCCGTCAACATGAATTGCATTGCTGAGTTTCCGTTTATTTGTTGTTGGAAATGATGCAAGTCATGTCGTTCATTGTTTTCGTAACTATTGTTAGGATATACATTTATGCAATTTCCTGAGTCTTGTTTTGAATTGACTGGAGTGGTTTTAACATGCACTGGATGGAGATCTCTCTCCACGTTTTTAATACCATATTAACTGCTCTTTTCCCTCCTAACTTTAAGCCGTTTCTTTAATTTCTCTCCGTCGTCTCGCTCTTCCTCTTAAGTGCTTAACTTCAATTAATTTCCTGTGCTCATGGCTTCACTCTTCCTACTCAAAACCGTTTGCTGCTGTTTGGACTTCAATGCAGTTGTTGCTGAATGAAGGATTGGATGGATTCTGTTGGAGAAGAGGCGTCTGGAGTTGGGTTGAATAGGCCGAGGACCTGAAACACTCTTAAGCTGAGTCGGCCCCACTTCATCTCCGGCCCTGTGCCCTCAGAGAGGCACAGTCCCTGGGCATACGAACAGAATGAACATACTTGAAGAGCTAGAAATGCTCAATGACTCTCAGTGCTTCCGTACTGTTTCTTATAGCGACAATGAAATAGtcctttttagttttattttttattttttaaaatgaaattaataaatgctgtttt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-154 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC1 (transmembrane and coiled-coil domain family 1).

Ensembl:

ensembl_id ENSDART00000086437

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008582 lncRNA upstream 252951 17956841 ~ 17963453 (+) False XLOC_003381
TCONS_00006629 lncRNA upstream 252951 17956888 ~ 17963453 (+) False XLOC_003381
TCONS_00008583 lncRNA upstream 256314 17957279 ~ 17960090 (+) True XLOC_003381
TCONS_00008581 lncRNA upstream 263846 17951563 ~ 17952558 (+) True XLOC_003380
TCONS_00008398 lncRNA upstream 284246 17930273 ~ 17932158 (+) False XLOC_003379
TCONS_00006646 lncRNA downstream 457801 18702362 ~ 18708059 (+) False XLOC_003393
TCONS_00008584 lncRNA downstream 459568 18704129 ~ 18708059 (+) True XLOC_003393
TCONS_00008585 lncRNA downstream 496466 18741027 ~ 18742103 (+) True XLOC_003394
TCONS_00006647 lncRNA downstream 588352 18832913 ~ 18833246 (+) True XLOC_003395
TCONS_00008586 lncRNA downstream 2643549 20888110 ~ 20890881 (+) True XLOC_003405
TCONS_00006640 mRNA upstream 15703 18183220 ~ 18200701 (+) True XLOC_003389
TCONS_00006639 mRNA upstream 38905 18175893 ~ 18177499 (+) True XLOC_003388
TCONS_00006638 mRNA upstream 57521 18157260 ~ 18158883 (+) True XLOC_003387
TCONS_00006637 mRNA upstream 84338 18130300 ~ 18132066 (+) True XLOC_003386
TCONS_00006636 mRNA upstream 161270 18053333 ~ 18055134 (+) True XLOC_003385
TCONS_00006643 mRNA downstream 367605 18612166 ~ 18698259 (+) False XLOC_003391
TCONS_00006644 mRNA downstream 367860 18612421 ~ 18699569 (+) True XLOC_003391
TCONS_00006648 mRNA downstream 628552 18873113 ~ 19085997 (+) False XLOC_003396
TCONS_00006649 mRNA downstream 628569 18873130 ~ 19020045 (+) False XLOC_003396
TCONS_00006650 mRNA downstream 629058 18873619 ~ 19091767 (+) False XLOC_003396
TCONS_00006630 other upstream 231630 17964689 ~ 17984774 (+) False XLOC_003382
TCONS_00006627 other upstream 702772 17441957 ~ 17513632 (+) True XLOC_003377
TCONS_00006626 other upstream 704667 17441887 ~ 17511737 (+) False XLOC_003377
TCONS_00006625 other upstream 715616 17441887 ~ 17500788 (+) False XLOC_003377
TCONS_00006624 other upstream 722127 17441887 ~ 17494277 (+) False XLOC_003377
TCONS_00006645 other downstream 431881 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006652 other downstream 815538 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006668 other downstream 1788505 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006677 other downstream 2807667 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006686 other downstream 3405961 21650522 ~ 21650638 (+) True XLOC_003418

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_04702204_04717881.mRNA True 4346 mRNA 0.46 7 CI01000058 4699988 ~ 4717881 (-)