RNA id: TCONS_00006627


Basic Information

Item Value
RNA id TCONS_00006627
length 2261
RNA type processed_transcript
GC content 0.41
exon number 4
gene id XLOC_003377
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17440591 ~ 17513632 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGGAGGAACATGTGAGGTGATCGCAGCACACCGATGTTGCAACAAGAACCGTATTGAGGAACGTTCCCAGACGGTCAAGTGTTCATGTTTACCAGGAAAAGTGGCTGGCACGACACGAAACAAACCCTCCTGTGTAGACGCCTCCATTGTGATTGGGAAGTGGTGGTGTGAGATGGAGCCATGTCTGGAGGGAGAAGAGTGCAAGACGCTACCAGACAACTCCGGCTGGATGTGTTCCTCTGGGAATAAGATCAAGACCACGAGGAACACCCAGCCATATTCCACTTTTTAGCTCTGAGGGCCACTCAATCTTCAGAAGCTCAGCGGCGTCCTTCTCCTCATCAAGATTCATCCCCGGACCTAACAAAGAGCTCCTTCACAGGCGGTGAATGTGGATTCTCTCTGTCAAAAAAATGGACGAAACCATTCATTCAAAGGGGTGTTTGACTGGATTACCTGTGAATGAACAATAAAGGAGGATAAATACACAATATTTGCTCATTCGGTGCCAAGGAATATATGAAAAATCGAAATAAAGCAGGCTAATCTGTGTTTTGATCAATGAGCCCAACGCTGCGGACTCAACAGTCCTGTACACTTCCGTCGATTTTCTGTGTTTCTCCTGACCACCTTCCTCTGGTTCTAAACTTATACAGCTTAGAGGAGCCGTTTACTGGATTTCAAATTATACCTGAAGACTTTACCTCCCTAGGTAAACTGGACAATCCTGATATAAGCTGTGAACGACTGTATGAAGGATCATGATGGATAAGCGCTGGTCTGTGAAAATGAGGAGGAAATCAATAGGAGATTTTTTCCATCCCTCCATCAATCTGTCATTGCGTCGTCCACGCTGGCTTTGGTAATAGACTGGGAGTTTGTGAAGCCCTACTGTTTCCCCTCCACTTCTGAGTTTATCACTCAGTGCTACTGTCTACATGCTGTTCGTTTTGGAAAATCCCCCCCGCAGGTCAAAGCTCACCCTCTCACCGTCTACACCTACTTGAGCCAGATATCTTTTTATTTGTCGGCATGCTCAATGTATTTTGTGGGAGCTTTGTATTGAAAgtaactgtatatatttctgtatatatacatatagatacatattAAAAGATATCATATGAAGATCTAACATGCCCATAAACCTGTTCAGTGGGACTATATTGATGGTCTTTGTTCCTCGGACAACAAGTACAATTAATCCTGAATTTAAAGCTGTTTGTGGAAGTAGATATTCTCTCAATGTAATTGAAGAcctgctttttttcttttgcttgacGACTTTTTCCGATGAatctaatatattttttaaaattcactAAACAGTTTTGCAGAAAAAAAGCATTACAGCCCAAACAAAATACGCTGAATTAGTCATGGGTATTTAAGTCATTGTCATTCATTTACAATGCAAACAAACTCATTTTCATGCAAATTAGGCTTATTAAAAACTGTGGATTATTCAAAGAACTATTTACTTGTTGAAATTAATGTTGTGCTACTACATTTTATGTTGATCATGACAGTACTAATTCAAAAGAGATGCTGTGACACATCAAGTCAACTAAGAATTAGTGCAGATTCAAGGCAAGTAATATGTTGTCGGCTCAGATTGTGTGGGGTCTTGgcctaaacattttaaaattagtaTTCTTCATTAAGATGAcagaaaaaccaaaacaaagactgcatacagtatatacaagCATCACACTTCACAAAATATCAGTCATCTTGATCTCCATTTGAAttctaatgctgagttcagactgcataaatttagccccgattttgactagccgacaggttttgagaaatcgcaggcAATCGGTGCTCATTCATGTGAgaaacaatcacacagtatgaactatcaaagacgcgatctgaaaGAATCGCAGATAAGTCATCAACACCCgtcagatatttggcatgctaaatatctggacctgtcagtgattcaaaatcatgccgtgtgaaatgtgtttgGTTAAAATGAACAttggcgatcacctacagcctaTGACAGAGCGGCATTCACTCGTATGAGTATCTGTAGACCAGTGAGAGGTTGGCTGAGAAGTTCAATTTGCTTCTTCTCAGTCTATTTGGACTCAAGAAATGGagtagtgtaaatttggcaggattACTCGTGTCCGTTTGACTTGTCGTCGGAGCAATATCATAGCCgggttgaaaaagaaaaaaaagttgaggaaaatgtgctaattcccttcaaaggcCAGGGGCCTTATGTaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000173134

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008579 lncRNA upstream 271780 17093078 ~ 17170177 (+) True XLOC_003374
TCONS_00006613 lncRNA upstream 300070 17137852 ~ 17141887 (+) False XLOC_003375
TCONS_00006614 lncRNA upstream 300075 17138440 ~ 17141882 (+) False XLOC_003375
TCONS_00008580 lncRNA upstream 300195 17138584 ~ 17141762 (+) False XLOC_003375
TCONS_00006620 lncRNA upstream 300244 17139320 ~ 17141713 (+) True XLOC_003375
TCONS_00006628 lncRNA downstream 405511 17919143 ~ 17920013 (+) True XLOC_003378
TCONS_00008398 lncRNA downstream 416641 17930273 ~ 17932158 (+) False XLOC_003379
TCONS_00008397 lncRNA downstream 416641 17930273 ~ 17932158 (+) True XLOC_003379
TCONS_00008581 lncRNA downstream 437931 17951563 ~ 17952558 (+) True XLOC_003380
TCONS_00008582 lncRNA downstream 443209 17956841 ~ 17963453 (+) False XLOC_003381
TCONS_00006610 mRNA upstream 853913 16574625 ~ 16588044 (+) True XLOC_003373
TCONS_00006608 mRNA upstream 1117382 16216909 ~ 16324575 (+) False XLOC_003372
TCONS_00006609 mRNA upstream 1159682 16216964 ~ 16282275 (+) True XLOC_003372
TCONS_00006606 mRNA upstream 1262767 16166117 ~ 16179190 (+) False XLOC_003371
TCONS_00006631 mRNA downstream 470535 17984167 ~ 17994777 (+) False XLOC_003382
TCONS_00006632 mRNA downstream 470536 17984168 ~ 18081864 (+) False XLOC_003382
TCONS_00006633 mRNA downstream 470722 17984354 ~ 18081744 (+) True XLOC_003382
TCONS_00006634 mRNA downstream 509833 18023465 ~ 18030903 (+) True XLOC_003383
TCONS_00006635 mRNA downstream 524097 18037729 ~ 18039583 (+) True XLOC_003384
TCONS_00006621 other upstream 113276 17328565 ~ 17328681 (+) True XLOC_003376
TCONS_00006600 other upstream 1318875 16122786 ~ 16123082 (+) True XLOC_003369
TCONS_00006599 other upstream 1358349 16070438 ~ 16083608 (+) True XLOC_003368
TCONS_00006591 other upstream 1539762 15886970 ~ 15902195 (+) False XLOC_003365
TCONS_00006578 other upstream 2423433 15017185 ~ 15018524 (+) False XLOC_003358
TCONS_00006630 other downstream 451057 17964689 ~ 17984774 (+) False XLOC_003382
TCONS_00006645 other downstream 1162810 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006652 other downstream 1546467 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006668 other downstream 2519434 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006677 other downstream 3538596 21052228 ~ 21052344 (+) True XLOC_003409

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_04923557_04926609.mRNA True 1813 mRNA 0.41 4 CI01000058 4923290 ~ 4927654 (+)