XLOC_003383 (si:ch211-14i3.2)


Basic Information

Item Value
gene id XLOC_003383
gene name si:ch211-14i3.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18023465 ~ 18030903 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006634
GAAGAAGACAACATTCAAGGATAACCACTGCAGCAGCAATGCATCTAAAATAATTCGCAACTGAGAAGAATTTCAATAATCACTTTACGGCTGACTCCGGCACCATTTTTGGCACTAACAAAATGGCTTGGCTCCACACGCTGGCATTAGCACTGTCTCTTCTCCAGCAAGCTGTCACGTCCCATGACTCTAACTCAACAACACAACCCTTAAGCCACAACAACCTGAGCAACCAGGCACTTGATGAGCTTCTGAAATCTCTACGCACATCACATCACACAGGACTGATTGTGGAAAGAGTGGACAACAGATTGTCTAAAGATTTGCTTTTACCCCTTTTGCCCGACTTTAGCATAAACGAGGGCTCTGGGGAGGGAAGTGGACTTCAGCAAAGCCTTGAGATTATAATGCCCTCTACTGGTCCACTGGAAATGGACATGTTAATTCCAGACAGACCAGAGAAACAAGATTTGGAGAAGCAAGAATCAGGTGCTCACCCTTCTCTTCCAGTTGCAGAAAAACTAACTCAACATATTGATCATGAGGAGGAGGATATAATTTTAGAAGGAAATAACAGTGCTCCTGATCAAGCCACGTCTACAGTGACTACACACACCTACATAAATAACAATGAGAGAATGGACAAAGACCAAGCATTGTTGACAACCACCAAACCAACAACAGGAACAAATACTACAAGGAACTTTACTGCTAATTTAGATTTGCAGACATATGATACTGAAGTACAGAGGAACAATAATGAAGATATGAAGACTTTGCAGGATACAAAGTATGTTGCATCCACACAGAATTTACAGAGCTCTATAACAAAGCCTGAAACCTCAGGAAACAATGGCACTGTTGTGATGCAGCCTGACACCATCCAAGAGCCCCCTCAGAATCTCTTAGTGGGAAAGGAACGTTATGTCACCAACCACCCGCCTGCTGCCACACCCACATTACAGGCTGGTAAGGACACGCATGAGGAGACTACATCTGGTTTACCTGTGGGGTCATCATCTACAGCTTCATCTCTTTTGCAGACAAGAAACATAGCCGTAGATAAAGATGACCCCAAAAACAAAGATGTTGAAAAATGGTTTAGAAGTTTGTTTGGATTGCTATCAGAAAAAGACTTGTCTGGATACATAGGCACATGCATACTAGGCCCATGTGTAGTCTCCACCAGTGGGAATGTGACCCGGCTACAGTGGGAGGACTTGAAACGGACATTATCCTTTGCTTGGGAGCTCCATGTGTTTGGTTCAGCTGTGCTATTTCTGTTGATGGCGGTTGCTGCAACTTTCGGATTGATGGGCGGATTTAAAATGCTCCATCCCTTTCGCCAGGCCTTTACCCTTGCGAATGCTCTCCTACTGCTAGCTGGTTTTCTTCGATTTGCCCAGCTCATAATTGACCCATACGGTACCAGAAACATTCTGCCTAGAAGTACCCTCATTGCTTTGTATAACCTACCTGTTCCGTTATTGCTCTGGGCCCAGGCCACGTTGGCTCTTCTTGCTCAGAGAGAAGAAACATCTTCTCATCGACTCTCGGCGACTGGGGGACTGGCAGCACTTCACTGTACCTCGCTCCTGTTAGCTGACCTGCTAACTAAAACTTTGTCTCCAACATTGCCGTTAATGCTCCAGACGCTTACTGTCTGCTGGGGGCTACCACTTTGTTTAGGAATTTTCTTTCAGTCTCTAAAGAAACTCTGCACTTCCCACAGGACCCCATTTCCAGGGTGGAGTGCCCCCAAGCGCTTAGAAAACAGCGTTAGGCGTGTACTGTTGCTATGCACTATCCTCGGAGTCCTCTCCTGTGTTCTGCAAACCTACAGTTTCCTCTGGCTGTATGGGTTACTTGGTGATTGGCGCAGATTTGGATGGGGCTGGTGGCTCGGGCAACTCTCAGCACGACTGTTTGAGTTGGCCTGGAGCTTTTCTCTTCTACTGCTGGGATCTCGAGTGTTCTGGAAACCACAAGCAAGTAAGCAGACAGTTAAGAGAATGAAGAAGGGGAAAAGAGGGTCAAGTTGGAACAGGCTGTTGGACAGGTTACCAATGGGGCCTTGGAGGAGACCAGATAGAAGCTGGGCTAAACTGTTGCCAAATAACTGGAAAGGTCGTAAGCAGTTTAGTGCAAATGTCAGCCAGTCAGCGATCCAAAACCCTGCAACTCCAACAACCTCAGTCATGTCTGGGTATGACAATTCTGAAGTTATTGGCGGAGGAGTCATGTACAGCAGCAGTTACGACTATCATGCCTCTCCACTGTGGACAAATGGTATAGAATGGCAAGACCATGAGTGCTTTCTCTCACTTATTGAATTTGACCTTCACCCTCCTTCTCCTGTCAACCTTCATCACAGCATTGATAGTGCCCTCCATCATGCTCACTTGCTTGGTGTAGGTACTATTTTCACACCTTCAGCAGCCACCTGGACTCAGAACGAGCGGTTAGGTGGACCACGTTGCGATGATGTTGACTCACCCACCGCCACATCTAACAAAGCCTATAGATGGGCTTTAGATGCTGGCTCAAGTCCTAATTCTCCAGAGCATATTGGGACTACATTACAGCAGGCTCAAGTGTCTGTGATTGAACCCGTGGCTTCTTTTACTCCAGAGACCATTAGAAAAGTGTGGGAGAGAGATACAGCCATCCCGAGGGTCACTGTAGATGACTGCACCAGCATAGCAAGTGGAGATGACATCACTAGTCTTTGA

Function

symbol description
si:ch211-14i3.2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PRRT3 (proline rich transmembrane protein 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-318 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PRRT3 (proline rich transmembrane protein 3).

Ensembl:

ensembl_id ENSDARG00000097323

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006634 True 2732 mRNA 0.46 4 18023465 18030903

Neighbor

gene id symbol gene type direction distance location
XLOC_003381 NA coding upstream 60012 17956841 ~ 17963453 (+)
XLOC_003380 NA coding upstream 70907 17951563 ~ 17952558 (+)
XLOC_003379 NA coding upstream 91307 17930273 ~ 17932158 (+)
XLOC_003378 CR589944.3 coding upstream 103452 17919143 ~ 17920013 (+)
XLOC_003377 BX571952.1 coding upstream 509833 17440591 ~ 17513632 (+)
XLOC_003384 zgc:175135 coding downstream 6826 18037729 ~ 18039583 (+)
XLOC_003385 zgc:175135 coding downstream 22430 18053333 ~ 18055134 (+)
XLOC_003386 zgc:175135 coding downstream 99397 18130300 ~ 18132066 (+)
XLOC_003387 zgc:173545 coding downstream 126357 18157260 ~ 18158883 (+)
XLOC_003388 zgc:173545 coding downstream 144990 18175893 ~ 18177499 (+)
XLOC_003369 CR854846.2 misc upstream 1900383 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 5311469 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 5329202 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 5337866 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 5343437 12679732 ~ 12680028 (+)
XLOC_003392 BX296530.1 non-coding downstream 645539 18676442 ~ 18676557 (+)
XLOC_003393 NA non-coding downstream 671459 18702362 ~ 18708059 (+)
XLOC_003394 NA non-coding downstream 710124 18741027 ~ 18742103 (+)
XLOC_003395 CU207354.2 non-coding downstream 802010 18832913 ~ 18833246 (+)
XLOC_003402 BX276115.1 non-coding downstream 2002163 20033066 ~ 20033185 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_04740788_04743613 NA coding CI01000058 null 4740702 ~ 4743732 (-)