XLOC_003388 (zgc:173545)


Basic Information

Item Value
gene id XLOC_003388
gene name zgc:173545
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18175893 ~ 18177499 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006639
ATGGCTGTGATGTCATTCGGTTCTTCAATTGCTGGTCCAGAGGCCTTTTCTGATTCTGGTGCTAATAGAGCAGTCTCTGGAGACACAATCCATTTTGGCAAACTTTTAATTGGTGGTCAAAGTGTTGaacctaataataaaaaagatgggTCCAGACCTGCTTCAGCTGAACAAACAATTGAGGATGaACGGTTCCGGCTAGCAAGAGCTAAACTGCAACGACTGGGTCCTTCTCTACAGTGTGGAAATGATTCAATGACCTTAAATATTAAAGGACACAGAACACCACACTTTCTGGTTGAGAGAGGAGAGGGTTCACCAGTGTCTTTGTCTGAGATGCCAGCCAGCTGTGGGTTCTCACTGAAGCGCATTCGCAGGGATGTTTCTCTTGTTGCTCCATACACTGGTTGTAACGTCAGACAACAGGGTGGTAGTTATGTTCTGCCACTCATTATAATGGGGGCTCCAGTGCAAATGTCCTGCCCTGTGAGTCCTCGCCTTCCTGTGGTGTCCTGCACCACATCCTCCATGTGCTCATTTACTCTGGATAATGTTGGTGGCTCAATGGTGTTGACAGCACCGTTTACAGGAAGCTGTTGGGATAGTCAGGATACAGACTGGAACTTGACTTTGCTGTTGGGAGACCGAGAAGTAGTTCTTTCCTGTCCGAAGGCAACAGACTCAACACCGACTGTTCCCCCAACACCATTTCCTCTAGGGTATCCATATTTCCCATTTGGATACCCCTGGTGGTACCCTTGGAATCAGGCTCCTGCTGCACCACCTACAACTCCTGCTCCAGTTCAAGCCCCTGTTTACAGTCCATTTCCAATGTATTACCCTTATTACTATGGAGGTTTCCCTCACCGACGAAGGCACCATCATCGGCACCATCATCGGCACTGGTACCCTGAGTCTCAAGAGTCCTGGTACCCAATGTTGCCTCCTAATGAATTTGCACCATTCCAACCACCTCCACCACCCACCCCAGCTGCCCCCCAGATTCCACAGTATCCAGTTTTTCCAATGCCATTTAACCCAGTGAACACTGGTTTTAAAAACCCCTTCTGGCCTCCGGTACCTCAGTCAATCTCTAATCCTCAAAGTCTTAATTCTCCTGTGAACATCTGGGCTCGTAAACAGAAGAGATGA

Function

symbol description
zgc:173545 Predicted to enable chemokine activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular space.

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0009615 response to virus biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0008009 chemokine activity molecular_function
GO:0031726 CCR1 chemokine receptor binding molecular_function
GO:0031729 CCR4 chemokine receptor binding molecular_function
GO:0031730 CCR5 chemokine receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080215-6 Predicted to enable chemokine activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular space.

Ensembl:

ensembl_id ENSDARG00000113425

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006639 True 1152 mRNA 0.48 6 18175893 18177499

Neighbor

gene id symbol gene type direction distance location
XLOC_003387 zgc:173545 coding upstream 17010 18157260 ~ 18158883 (+)
XLOC_003386 zgc:175135 coding upstream 43827 18130300 ~ 18132066 (+)
XLOC_003382 rpusd4 coding upstream 94029 17964689 ~ 18081864 (+)
XLOC_003389 LO018315.6 coding downstream 5721 18183220 ~ 18200701 (+)
XLOC_003390 tmcc1b coding downstream 28267 18205766 ~ 18244561 (+)
XLOC_003391 ncoa3 coding downstream 434667 18612166 ~ 18699569 (+)
XLOC_003392 BX296530.1 coding downstream 498943 18676442 ~ 18676557 (+)
XLOC_003393 NA coding downstream 524863 18702362 ~ 18708059 (+)
XLOC_003369 CR854846.2 misc upstream 2052811 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 5463897 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 5481630 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 5490294 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 5495865 12679732 ~ 12680028 (+)
XLOC_003381 NA non-coding upstream 212440 17956841 ~ 17963453 (+)
XLOC_003380 NA non-coding upstream 223335 17951563 ~ 17952558 (+)
XLOC_003379 NA non-coding upstream 243735 17930273 ~ 17932158 (+)
XLOC_003378 CR589944.3 non-coding upstream 255880 17919143 ~ 17920013 (+)
XLOC_003377 BX571952.1 non-coding upstream 662261 17440591 ~ 17513632 (+)
XLOC_003394 NA non-coding downstream 563528 18741027 ~ 18742103 (+)
XLOC_003395 CU207354.2 non-coding downstream 655414 18832913 ~ 18833246 (+)
XLOC_003402 BX276115.1 non-coding downstream 1855567 20033066 ~ 20033185 (+)

Expression


Co-expression Network