XLOC_003389 (LO018315.6)


Basic Information

Item Value
gene id XLOC_003389
gene name LO018315.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18183220 ~ 18200701 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006640
GCACAGGTGAAAACAACAAGCTGATTGATGAACAGATGTGATTGGTCTATCTGTATCATTGAGTGATTCAAAAGTGACTACAAAAAGTCTAGTGTGTCTCAATAAACTCTACAACTTTTAGAGTTCAGAATCTTTAAGGATATtgtgaataaaaacagtttttaggtTTCACTGGGGGTACTCAGTAGACTTACCATGCCTTGGCCAAAGGGCATTTTACTTTTCATGATGGCTGTGATGTCATTCAGTTCTTCAATTGCTGGTCCAGAGGATTTTTCTGATTCTGGTGCTAATAGAGCAGTCTCTGGAGACACAATCCATTTTGGCAAACTTTTAATTGGTGGTCAAAGTGTTGAACCtgataataaaaaagacaaatccAGACCTGCTTCAGCTGAACAAACAATTGAGGATGAACGGTTCCGGCTGGCAAGAGCTAAACTGCAACGACTGGGTCCTTCTCTACAGTGTGGGAATGATTCAATGACCTTAAATATTAAAGGACACAGAACACCACACTTTCTGGTTGAGAGAGGAGAGGGGTCACCAGTGTCTTTGTCTGAGATGCCAGCCAGCTGTGGGTTCTCACTGAAGCGGGTACGCAGGGATGTTTCTCTTGTTGCTCCATACACTGGATGTAATGTGAGACAACAGGGTGGCAGTTATGTTCTGCCACTCATTATAATGGGGGCTCCAGTGCAAATGTCCTGCCCTGTGAGTCCTCGCCTTCCTGTGGTGTCCTGCATCTCCTCTGGTATGATCGTCTCATTTGGTGTCAGAGGAGATGATGTTCTTGTTAAAGTTTCTGGATCATGGATGCCTTTGTCTCTGACATCCTCCATGTGCTCATTTACTCTGGATAATGTTGGTGGCTCAATGGTGTTGACTGCACCATTTACAGGAAGTTGTTGGGATAGTCAGGACACCGACTGGAACTTGACTTTGCTGTTGGGAGACCGAGAAGTGGTTCTTTCCTGCCCGAAGGCAACAGACTCAACACCGACTGTTCCCCCCACACAATTTCCACAAGGGTATCCTTATTTCCCAGTTGGATACCCCTGGTGGTACCCTTGGAACCAGGCTCCTCCTGCTGCACCCCCCACAGTTCCGGCTCCAGTTCAAGCCCCTGTTTACAGTCCATTTCCAATGTATTACCCTTATTACTATGGAGGTTTCCCTCACCGACGAAGGCACCATCATCGGCACCATCATCGTCACTGGTACCCTGAGTCTCAAGAGTCCTGGTACCCAATGTTGCCTCCTAATGAATTTGCACCATTCCAACCACCTCCACCACCCACCCCAGCTGCCCCCCAGATTCCACAGTATCCAGTTTTTCCAATGCCATTTAACCCAGTGAACACTGGTTTTAAAAACCCCCTCTGGCCTCCGGTACCTCAGTCAGTCTCTAACCCTCAACGTCTCAATTCTCCTTGGTCCATCTGGTCTCGCAAACAGAAAAGATGAACAGAAGTGCTCTGATGCTGCAAGAGTCAAACTTTTTGTTAGTCATGTGAGCCAAATAAAGCCTCTTGAGACCAAATTTGTTTCCTGGCTTTCCCTTAAACAAGTTATTCTTTGGTTCGTCTTCTGAATCCATTTCTAGAAACTGAACTTGCATATACACTAATGGATTTTGTgtatggatttttttaaattattattatttttttttaatatataataatattatgtaaacTTTGACCGGTTACAAGTAGGTTCTTGGGTGATTTAGGAAAGGAACTAATGAGCTGTTGAGTAATTTGTAAAGTCAAAAGCAGTCTTGTCAACGTCAGGTAGTTGGTGATTTTAAAACAGAGTCCTGAAAATGCTCTGAGGGAACATGGGCTACCCCAAAATTAGAAGAGTTGTGACTCCGTAAGAACAGTCAAGACTAAGTGTGTGCGAAACCACTTGTGGTTATGATAGTTGAATCAGTAATTGGGGAGAACCATGCAGGCACAAACTAACTTGTTTAATGCTTTGAGTAGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116193

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006640 True 1992 mRNA 0.44 6 18183220 18200701

Neighbor

gene id symbol gene type direction distance location
XLOC_003388 zgc:173545 coding upstream 5721 18175893 ~ 18177499 (+)
XLOC_003387 zgc:173545 coding upstream 24337 18157260 ~ 18158883 (+)
XLOC_003386 zgc:175135 coding upstream 51154 18130300 ~ 18132066 (+)
XLOC_003385 zgc:175135 coding upstream 128086 18053333 ~ 18055134 (+)
XLOC_003384 zgc:175135 coding upstream 143637 18037729 ~ 18039583 (+)
XLOC_003390 tmcc1b coding downstream 5065 18205766 ~ 18244561 (+)
XLOC_003391 ncoa3 coding downstream 411465 18612166 ~ 18699569 (+)
XLOC_003392 BX296530.1 coding downstream 475741 18676442 ~ 18676557 (+)
XLOC_003393 NA coding downstream 501661 18702362 ~ 18708059 (+)
XLOC_003394 NA coding downstream 540326 18741027 ~ 18742103 (+)
XLOC_003369 CR854846.2 misc upstream 2060138 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 5471224 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 5488957 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 5497621 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 5503192 12679732 ~ 12680028 (+)
XLOC_003381 NA non-coding upstream 219767 17956841 ~ 17963453 (+)
XLOC_003380 NA non-coding upstream 230662 17951563 ~ 17952558 (+)
XLOC_003379 NA non-coding upstream 251062 17930273 ~ 17932158 (+)
XLOC_003378 CR589944.3 non-coding upstream 263207 17919143 ~ 17920013 (+)
XLOC_003377 BX571952.1 non-coding upstream 669588 17440591 ~ 17513632 (+)
XLOC_003395 CU207354.2 non-coding downstream 632212 18832913 ~ 18833246 (+)
XLOC_003402 BX276115.1 non-coding downstream 1832365 20033066 ~ 20033185 (+)

Expression


Co-expression Network