XLOC_003385 (zgc:175135)


Basic Information

Item Value
gene id XLOC_003385
gene name zgc:175135
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18053333 ~ 18055134 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006636
CTTTATAATCTTTAGAGTTAAAGATATATTAGGAAAGTGTGAAGAGAAACAGTTTTTAGGTTTCAGTGGGGAGCTACAGTAGACTCACCATGCCTTGGCCAAAGGGCATTTTACTTTTTGTGATGGCTGTGATGTCATTCAGCTCTTCAATTGCTGGTCCAAAGGCCTTTTCTGATTCTAGTGCTAATGGAGCAGTCTCTGGAGACGCAATTCATATTGGCAGACTTTCAATTGGTGGTCAAAGTGTTGAACCTGATAATAAAAAGGATAAATCCAGACCTGCTTCAGCTGAACAAACAATTGAGGATGaACGGTTCCGGCTGGCAAGAGCTAAACTGCAACGACTGGGTCCTTCTCTACAGTGTGGAAATGATTCAATGACCTTAAATATTAAAGGACACAGAACACCACACTTTCTGGTTGAGAGAGGAGAGGGTTCACCAGTGTCTTTGTCTGAGATGCCAGCCAGCTGTGGGTTCTCACTTAAGCGGGCACGCAGGGATGTTTCTCTTGTTGCTCCATACACTGGATGTAACGTCAGACAACAGGGTGGTAGTTATGTTCTTCCACTCATTATAATGGGGGCTCCAGTGCAAATGTCCTGCCCTGTAAGTCCTCGCCTTCCTGTGGTGTCCTGCACCTCCTCCGGTATGATCGTCTCATTTGGTGTCAGAGAAGATGATGTTCTTGTTAAAGTTTCTGGATCATGGATGCCTCTGTCTCTGACGTCCTCCATGTGCTCATTTACTCTGGATAATTTTGGTGGCTCAATGGTGTTGACTGCACCATTTACAGGAAGCTGTTGGGATAGTCAGGACACTGACTGGAACTTGACTTTGCTGTTGGGTGACCGAGAAGTGGTTCTTTCCTGCCCAAAGGCAACAGACACACCGACTGTTCCCCCAACACCATTTCCTCAAGGCTATCCATATTTCCCATTTGGATACCCCTGGTGGTACCCTTGGAACCAGGCTCCTCCTGCTGCACCCCCCACAACTCCTGCTCCAGTTAAAGCCCCTGTTTACAATCCATTTCCAATGTATTACCCTTATTACTATGGAGGTTTCCCTCACCGAAGGCACCATCATCGGCACCATCATCGGCACTGGTACCCTGAGTCTCAAGAATCCTGGTTCCCAATGTTGCCTCCTTATGAATTTGCACAATTCCAACCACCACCCACCCCAGCTGCCCCTCAGGTTCAACAGTATCCAGTTTTTCCAATGCCATTTAACCCAGTGAACACTGGTTTTAAAAACCCCTTCTGGCCTCCGGTACCTCAGTCAGTCTCTAATCCTCAAAGTCTTAATTCTCCTTGGAACATCTGGGCTCGCAAACAGAAGAGATGAACAAAGGTCCTCTGCTGCGAGAGTTTAAATGTATTAAGTCATGCTAGCCTAATAAAgccttttaaaactaaa

Function

symbol description
zgc:175135 Acts upstream of or within response to steroid hormone. Is expressed in ovary.

GO:

id name namespace
GO:0048545 response to steroid hormone biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080214-1 Acts upstream of or within response to steroid hormone. Is expressed in ovary.

Ensembl:

ensembl_id ENSDARG00000105499

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006636 True 1421 mRNA 0.46 6 18053333 18055134

Neighbor

gene id symbol gene type direction distance location
XLOC_003384 zgc:175135 coding upstream 13750 18037729 ~ 18039583 (+)
XLOC_003383 si:ch211-14i3.2 coding upstream 22430 18023465 ~ 18030903 (+)
XLOC_003381 NA coding upstream 89880 17956841 ~ 17963453 (+)
XLOC_003380 NA coding upstream 100775 17951563 ~ 17952558 (+)
XLOC_003379 NA coding upstream 121175 17930273 ~ 17932158 (+)
XLOC_003386 zgc:175135 coding downstream 75166 18130300 ~ 18132066 (+)
XLOC_003387 zgc:173545 coding downstream 102126 18157260 ~ 18158883 (+)
XLOC_003388 zgc:173545 coding downstream 120759 18175893 ~ 18177499 (+)
XLOC_003389 LO018315.6 coding downstream 128086 18183220 ~ 18200701 (+)
XLOC_003390 tmcc1b coding downstream 150632 18205766 ~ 18244561 (+)
XLOC_003369 CR854846.2 misc upstream 1930251 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 5341337 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 5359070 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 5367734 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 5373305 12679732 ~ 12680028 (+)
XLOC_003378 CR589944.3 non-coding upstream 133320 17919143 ~ 17920013 (+)
XLOC_003377 BX571952.1 non-coding upstream 539701 17440591 ~ 17513632 (+)
XLOC_003392 BX296530.1 non-coding downstream 621308 18676442 ~ 18676557 (+)
XLOC_003393 NA non-coding downstream 647228 18702362 ~ 18708059 (+)
XLOC_003394 NA non-coding downstream 685893 18741027 ~ 18742103 (+)
XLOC_003395 CU207354.2 non-coding downstream 777779 18832913 ~ 18833246 (+)
XLOC_003402 BX276115.1 non-coding downstream 1977932 20033066 ~ 20033185 (+)

Expression


Co-expression Network