RNA id: TCONS_00008585


Basic Information

Item Value
RNA id TCONS_00008585
length 888
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_003394
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18741027 ~ 18742103 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCTAAACGCACAATGACGCTGCCACTGTATTCATGTCAACTGGTGCTACACAAATTAGCACATACTTATCTGAGGTGATACGTCTTATTTTAATGCAAAACAGCTATTTCCTTATTCGCTGTATGCTAAGCAGACTCTCAATGTTTTCCGCATATGTTCTGACATAAACTTTAAAGACTTTTTTATGAACCTGAAGGGAGTGTAAAAGACTCAGAGGTTTTAAGACATTGTAAATATGCACCAGGCCATGTCTTCAGCTTAATTGgttctcaaatatatatataaatagaaatataacACTAATACAAGCAGAGGTGTGGCCACAATATCTGCAAAACATGCATATTTTTGAGCTAACATGATGGTTTTGAACTGTTACACATCTTTTCTTCAGTGGAGATATGAGTATTGTATCTgtggcttaatttttttttacaaatgtatattttttattcttaaaaaacaTCCTAAGTGTAGTCACTATATATGGAAAACATGCATATTTTTGTATGCTAACATGATAGATTTGCACTGTTACACATCTGTTCTTCACTGGAGAAAAAGGCACCATATATTTTGCTCTAATTTgttcacaaatgtgttaatttttatTACTGTTGTGTTGTTACTGGCACAATAAACTAGATAAATACTTCAAAGACAAGCAGAACTTCGTAAGTGTGTGCACAATACCTGGAAAGCATGCATATTTTTGTATGCTAGCAATGTTTTTGAACTGCTACATATCTCTCTACTGGAGAGACTagaattattttacaaatgtcaTTTTTCTGTCATTGTTGTATTGTTACTGGGacattaaactaataaaattataTGTATAACACTAATACCAGCAGAACTTCTCAAGTGTGGCCACAATACCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006646 lncRNA upstream 32968 18702362 ~ 18708059 (+) False XLOC_003393
TCONS_00008584 lncRNA upstream 32968 18704129 ~ 18708059 (+) True XLOC_003393
TCONS_00008582 lncRNA upstream 777574 17956841 ~ 17963453 (+) False XLOC_003381
TCONS_00006629 lncRNA upstream 777574 17956888 ~ 17963453 (+) False XLOC_003381
TCONS_00008583 lncRNA upstream 780937 17957279 ~ 17960090 (+) True XLOC_003381
TCONS_00006647 lncRNA downstream 90810 18832913 ~ 18833246 (+) True XLOC_003395
TCONS_00008586 lncRNA downstream 2146007 20888110 ~ 20890881 (+) True XLOC_003405
TCONS_00008589 lncRNA downstream 2186138 20928241 ~ 20930324 (+) False XLOC_003407
TCONS_00008588 lncRNA downstream 2186138 20928241 ~ 20930324 (+) False XLOC_003407
TCONS_00008587 lncRNA downstream 2186138 20928241 ~ 20930324 (+) True XLOC_003407
TCONS_00006644 mRNA upstream 41458 18612421 ~ 18699569 (+) True XLOC_003391
TCONS_00006643 mRNA upstream 42768 18612166 ~ 18698259 (+) False XLOC_003391
TCONS_00006642 mRNA upstream 496466 18216404 ~ 18244561 (+) True XLOC_003390
TCONS_00006641 mRNA upstream 497325 18205766 ~ 18243702 (+) False XLOC_003390
TCONS_00006640 mRNA upstream 540326 18183220 ~ 18200701 (+) True XLOC_003389
TCONS_00006648 mRNA downstream 131010 18873113 ~ 19085997 (+) False XLOC_003396
TCONS_00006649 mRNA downstream 131027 18873130 ~ 19020045 (+) False XLOC_003396
TCONS_00006650 mRNA downstream 131516 18873619 ~ 19091767 (+) False XLOC_003396
TCONS_00006651 mRNA downstream 317976 19060079 ~ 19072529 (+) False XLOC_003396
TCONS_00006653 mRNA downstream 318175 19060278 ~ 19068434 (+) False XLOC_003396
TCONS_00006645 other upstream 64470 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006630 other upstream 756253 17964689 ~ 17984774 (+) False XLOC_003382
TCONS_00006627 other upstream 1227395 17441957 ~ 17513632 (+) True XLOC_003377
TCONS_00006626 other upstream 1229290 17441887 ~ 17511737 (+) False XLOC_003377
TCONS_00006625 other upstream 1240239 17441887 ~ 17500788 (+) False XLOC_003377
TCONS_00006652 other downstream 317996 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006668 other downstream 1290963 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006677 other downstream 2310125 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006686 other downstream 2908419 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006698 other downstream 3971912 22714015 ~ 22714131 (+) True XLOC_003425

Expression Profile

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