XLOC_033826 (mcee)


Basic Information

Item Value
gene id XLOC_033826
gene name mcee
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 30779761 ~ 30783043 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066155
ataaagttttctcTCAGCGACCACAAAGATGGCTTCCTCTTTACTGAAGGTTGCAGTTACAGGGCTATCGAGGTGTGCCTGGCACACTTTACCCCCAGTGAGGGCTCTGTCTCTGACTTGTCCCGTCAGTCAAGGTGTCCCTCAGTCATTGTGGAAGTTGGGCAGGCTGAATCACGTGGCTATCGCAGTGCCAGACCTGGAGAAAGCCACAGCCCTGTACCGTGATGTGCTGGGGGCTCAAGTGAGCGACACTGTGCCTCTCCCTGAGCATGGGGTGTACACTGTGTTTGTGGAACTGGGCAACACTAAACTAGAGCTTCTGCACCCACTGGGAGAGAAAAGTCCTATTGCAGGATTCCTGCAGAAGAACAAAGCTGGAGGGATGCATCATATCTGCATTGAGGTGGATGATATCAATGCAGCAATAGTTGATTTGAAGGAAAAGAAAATCCGCCTGCTCTCCCCAGAGCCACGGATAGGAGCTCATGGCAAACCTGTGATGTTCCTCCACCCTAAAGACTGTGATGGGGTACTTGTTGAGATAGAACAGGCCTAGATAATAAACACTGATATTCCTGTCTTGCAAACCAGTGACTTTGATTAGACTGTTGAGTTCTACAGCTTAATGTATTAAGTGATATATGCAAAGATTTTCAGACAATTCCAGAACCTATCATTGTAACCTGTTACGGTGTATTTGACATTTAtgataattatgtatttattccTAACTGATGATTTTCTTCAATGACTTGAATAAATGgttaatttcataatttaaaagAGTAATTTAGTGTGTAACATTtagaaataatatttgtatttacgcttgggggggggggggggggttggggggggtgCAATAtatgttttagataaaaaaaacccCACTATTTACTGTCAGAACAAAGAAACAAGCTAAATGAAATCCATTTTAATTACTATAAAAACAGCAGATAAACTTAGCCAAGTTTATTAATGTGAATTAAAATCCTAGCAAGCTTCTCATCTGACTCTCAATGGAGTAGACAGATTGAAgctttctttttagttttttggCTGACATCCATGTATTTGGGAGGCAAGCTGGCTCATACCCATTCCTCCACCATAGACAGCCCTCTGCCAAAtagaaagttatttttgtttgtacGCCTTAAATCTTCTTTATAAAAGAGATAACTAGAGGAGTGGTATTGGGAACTGATGTTTTGGGGCTTCTAGTTTTGTCACTATCCTCTCAGAGGTTTTGCTTGAACATTGCGTCTGCAGAACCGTTAgaataattttcagttttaagctgtttttgacattttaatttatttggcaGTCTGAATAGACACAGAAATCTTTCCAGGAAAATTCACACTGAGTCtgtcacagttttttttaatatcttctcTTTTCGTCTGTGCTAGACTGCAACTTGGGATAGATCTGTCCATCTGTATTGCAAGCATATAttattaaatctttaaatattttaaataaaggcattatatttta
>TCONS_00066156
CAGGTAAATAGTAGTAAGCTGAGATGTTTTATTGCGCCTACATCTTTCCGGTGAATGAGTTTATTCAGTTCGCATGTGTCTCTGTAATATCTGTCTCCCTCTCTGACAGCTTTCATGTTTGAAATCCAAAATATGATTTATTGTTATCGTACTATATTTATTGCATCCACATTGAGGCTGATCTCTACTGCAGTTACAGGGCTATCGAGGTGTGCCTGGCACACTTTACCCCCAGTGAGGGCTCTGTCTCTGACTTGTCCCGTCAGTCAAGGTGTCCCTCAGTCATTGTGGAAGTTGGGCAGGCTGAATCACGTGGCTATCGCAGTGCCAGACCTGGAGAAAGCCACAGCCCTGTACCGTGATGTGCTGGGGGCTCAAGTGAGCGACACTGTGCCTCTCCCTGAGCATGGGGTGTACACTGTGTTTGTGGAACTGGGCAACACTAAACTAGAGCTTCTGCACCCACTGGGAGAGAAAAGTCCTATTGCAGGATTCCTGCAGAAGAACAAAGCTGGAGGGATGCATCATATCTGCATTGAGGTGGATGATATCAATGCAGCAATAGTTGATTTGAAGGAAAAGAAAATCCGCCTGCTCTCCCCAGAGCCACGGATAGGAGCTCATGGCAAACCTGTGATGTTCCTCCACCCTAAAGACTGTGATGGGGTACTTGTTGAGATAGAACAGGCCTAGATAATAAACACTGATATTCCTGTCTTGCAAACCAGTGACTTTGATTAGACTGTTGAGTTCTACAGCTTAATGTATTAAGTGATATATGCAAAGATTTTCAGACAATTCCAGAACCTATCATTGTAACCTGTTACGGTGTATTTGACATTTAtgataattatgtatttattccTAACTGATGATTTTCTTCAATGACTTGAATAAATGgttaatttc

Function

symbol description
mcee Predicted to enable methylmalonyl-CoA epimerase activity. Predicted to be involved in L-methylmalonyl-CoA metabolic process. Orthologous to human MCEE (methylmalonyl-CoA epimerase).

GO:

id name namespace
GO:0046491 L-methylmalonyl-CoA metabolic process biological_process
GO:0004493 methylmalonyl-CoA epimerase activity molecular_function

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko00640 Propanoate metabolism
ko00720 Carbon fixation pathways in prokaryotes
ko00280 Valine, leucine and isoleucine degradation

ZFIN:

id description
ZDB-GENE-050522-368 Predicted to enable methylmalonyl-CoA epimerase activity. Predicted to be involved in L-methylmalonyl-CoA metabolic process. Orthologous to human MCEE (methylmalonyl-CoA epimerase).

Ensembl:

ensembl_id ENSDARG00000045428

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066155 False 1506 mRNA 0.40 3 30779761 30783043
TCONS_00066156 True 909 mRNA 0.44 2 30779814 30782309

Neighbor

gene id symbol gene type direction distance location
XLOC_033825 mtmr10 coding upstream 8614 30725473 ~ 30771147 (+)
XLOC_033824 ccnb2 coding upstream 148642 30626378 ~ 30631119 (+)
XLOC_033823 mindy2 coding upstream 241983 30493684 ~ 30537778 (+)
XLOC_033822 AL935053.1 coding upstream 303379 30475836 ~ 30476382 (+)
XLOC_033821 BX957301.1 coding upstream 340740 30438905 ~ 30439021 (+)
XLOC_033827 apba2b coding downstream 4860 30787903 ~ 30915965 (+)
XLOC_033828 si:dkey-1h4.4 coding downstream 143246 30926289 ~ 30930493 (+)
XLOC_033829 tjp1a coding downstream 147610 30930653 ~ 31142273 (+)
XLOC_033830 fam189a1 coding downstream 362343 31145386 ~ 31336235 (+)
XLOC_033831 casc4 coding downstream 556086 31339129 ~ 31367917 (+)
XLOC_033814 NA non-coding upstream 662653 30094809 ~ 30117108 (+)
XLOC_033813 NA non-coding upstream 703589 30072878 ~ 30076172 (+)
XLOC_033808 BX914219.4 non-coding upstream 848122 29931525 ~ 29931639 (+)
XLOC_033836 NA non-coding downstream 1144945 31927988 ~ 31975960 (+)
XLOC_033838 NA non-coding downstream 1387156 32170199 ~ 32171758 (+)
XLOC_033840 NA non-coding downstream 1679600 32462643 ~ 32472938 (+)
XLOC_033841 BX511109.1 non-coding downstream 1692300 32475343 ~ 32491150 (+)
XLOC_033844 AL929252.1 non-coding downstream 1898597 32681640 ~ 32681755 (+)

Expression


Co-expression Network