G1456888


Basic Information

Item Value
gene id G1456888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47707696 ~ 47709766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1666780
ACATTTGGATAGGGTGATCAATTTGGCTAATATTCTGAATATATAGGTTTTTTTATCTCAGGTTAAGGTTTATATTTTGTTGTGTGCCTAGTACTAATGCTACCCCATTAAAAATAACAATGAGAAAAGTATTAAGTCTGTAGCAAATTTCCAAATTAATTGGATAAGATAGCTAGATTGATACTGTAACTAagggatacagtatatataatagTTGGAACTGTTGCTCACACACTTGAAGATTGATTGCACTCATTTCACAATATGATTGCAATGGAAGATATTTTCCATCCCATGACTTTGGTCATATTCATGATCATACCTTGATGAACATTGGAGAGAATATTCCACATACTCACACAATCTCTGTCAAACTGCTACTCCGGTCCTAGCACAGGAATTTGATTTAAGTATTACAATACAACCAATTCTGTTAAAATTATCTTTGTTGATATTGAGAATTATTTTAAATTCCTGACTAAATTGTTAAAATAGTCTAATTTGACTGTAGCCATATAATATATACTATATCACATTGTTGGTAAGTAAAGTATGTTATGTTCAATAGAATCCTACAGAATATGAGGTGGTTTAAAACATCCAGCTTATTTAGTAGTTTTACTGTATTCATGGACTCATTGAATATGACATTAAAACATGTTAtcttatacagtaccagttaaacgtttggacacctactcattcaagggtttttcttgtattattttatacatggtagaatagtgaagacatcaacacatatggaatcatgtagtaaccaaaaaaagtgttaaacaaatattttatataagataattcaaagtagccaccgttttccttgatgacagctttgcacacgcttggcattctctcaaccagcttcataagatagtcacctggaatgcattttaattaacacgtgtgccttgttaaaagttaatttgtggaatttctttccttaatgtgtttgagacaatcagttgtgttgtgaaaaggtaaGGGAAgatatacagaagacagccctatttagtaaaatgccaagtccatattatggcaagaacagctcaaataagcaaagagaaacaacagtccattactttaagacatggtcagtcaatccggaacatttctagaactttgaacgattcttcaagtgcagtcgcaaaaaccatcaagcgctatgatgaaactgtctctcatgaggcctgccacaggaaaggaagacccagagttacctctgctgcagaggataagttcattagagttgccagcctcagaaattgcagcccaaataaattcaagAGCAGACACATCAACAGTTCAGATGATACTGCATGAAATCAGCCCTTCGTGGTCatattactgcaaagaaacccctactaaaggacacgaAGACGACGACCAGCTTGGGCCGAgaaacaagcaatggacattagaccggtggaaatctgtcctttagtccgagtccaaatttgagagaCTTGTTTCCAACTGCTGCATCTTtgagagacgcagagtaggtttaaagatgatctccgtatgtgtggttcccaccgtgaagcatacaggaggtgtgatggtgctttgctggtgacactgtcagtgatttatttagaattcaagacacacttgaccagcatggttactacagcattctgcagtgatacgccatcccatctggtattggcttagtgagactatcatttgtttttcaatcggacaatgatccaacacacctccaggctgtgtaagggtcatttgaccaaggagagtgatggagtgttgcatcagatgacctgtcctccacaatcacccgacctcaacccaattgagatggtttgggatgagttggaccgcaaagtgaaggaaaagtacccaacaagtgctcagcatgtgggaactccttcaagactgttggaaaggtgaagctggttgagagaaagctttgcacactcttggcagtcaAGGCAaaagatggctactttgaagaatctaaaatatattttgatttgtttaatacttggTTAGTACGCAACTCCATAGTTTGTCATTGCATAGTTTGTCTGTcttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1666780 True 2071 lncRNA 0.38 1 47707696 47709766

Neighbor

gene id symbol gene type direction distance location
LOC110493989 LOC106565315 coding upstream 330996 47374636 ~ 47376700 (+)
otop1 LOC106565199 coding upstream 335115 47365071 ~ 47372581 (+)
LOC110493987 LOC106565200 coding upstream 345910 47352232 ~ 47361786 (+)
lyar lyar coding upstream 366465 47328302 ~ 47341231 (+)
LOC110493983 LOC106565202 coding upstream 399507 47286927 ~ 47308189 (+)
idh3b LOC106565197 coding downstream 18658 47728424 ~ 47743582 (+)
LOC110493993 LOC106565195 coding downstream 34590 47744356 ~ 47790013 (+)
LOC100135862 LOC106565314 coding downstream 95746 47805358 ~ 47807518 (+)
LOC100136222 LOC100136222 coding downstream 105125 47814891 ~ 47818587 (+)
LOC118940470 NA coding downstream 118949 47828715 ~ 47833280 (+)
G1456889 NA non-coding upstream 1771 47704632 ~ 47705925 (+)
G1456916 NA non-coding upstream 6122 47701339 ~ 47701574 (+)
G1456912 NA non-coding upstream 8221 47699039 ~ 47699475 (+)
G1456818 NA non-coding upstream 97456 47574332 ~ 47610240 (+)
G1456708 NA non-coding upstream 229660 47426255 ~ 47478036 (+)
G1456883 LOC106565198 non-coding downstream 4177 47713943 ~ 47714747 (+)
G1456920 NA non-coding downstream 18029 47727795 ~ 47728035 (+)
G1457051 NA non-coding downstream 267168 47976934 ~ 47977139 (+)
G1457091 NA non-coding downstream 366600 48076366 ~ 48076682 (+)
G1457093 NA non-coding downstream 377839 48087605 ~ 48087822 (+)
G1456570 NA other upstream 478900 47228219 ~ 47228796 (+)
G1454824 NA other upstream 1849195 45856249 ~ 45858501 (+)
G1454127 NA other upstream 2371173 45335294 ~ 45336523 (+)
G1454049 NA other upstream 2448125 45258475 ~ 45259571 (+)
G1453914 NA other upstream 2636771 45069971 ~ 45070925 (+)
G1456969 NA other downstream 123814 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 321148 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 679316 48389082 ~ 48424478 (+)
bsnb LOC106565168 other downstream 983555 48693321 ~ 48814670 (+)

Expression


Co-expression Network